Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05764 and H281DRAFT_05765 are separated by 42 nucleotidesH281DRAFT_05765 and H281DRAFT_05766 are separated by 20 nucleotidesH281DRAFT_05766 and H281DRAFT_05767 are separated by 100 nucleotidesH281DRAFT_05767 and H281DRAFT_05768 are separated by 49 nucleotides H281DRAFT_05764: H281DRAFT_05764 - flagellar basal-body rod modification protein FlgD, at 37,305 to 38,036 _05764 H281DRAFT_05765: H281DRAFT_05765 - flagellar hook protein FlgE, at 38,079 to 39,587 _05765 H281DRAFT_05766: H281DRAFT_05766 - flagellar basal-body rod protein FlgF, at 39,608 to 40,366 _05766 H281DRAFT_05767: H281DRAFT_05767 - flagellar basal-body rod protein FlgG, at 40,467 to 41,255 _05767 H281DRAFT_05768: H281DRAFT_05768 - flagellar L-ring protein precursor FlgH, at 41,305 to 42,003 _05768
Group Condition H281DRAFT_05764 H281DRAFT_05765 H281DRAFT_05766 H281DRAFT_05767 H281DRAFT_05768
carbon source Azelaic (C) +0.1 -0.2 -4.7 -0.7 +0.8
ecofab LB in EcoFAB_3.5mL -0.8 -0.6 -0.8 -0.7 -0.8
carbon source adipate (C) +0.5 +0.2 -1.6 -0.6 +1.0
carbon source Malonic (C) -0.8 +0.7 +0.8 +0.5 +0.9
carbon source 4-Hydroxybenzoic Acid (C) +0.9 +0.9 +1.6 +0.1 -0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.8 +0.4 +0.9 +0.5 +0.6
carbon source Malonic (C) +0.5 +0.7 -0.3 +0.8 +1.5
carbon source D-Glucose (C) +1.1 +0.8 +0.2 +0.6 +0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.1 +0.3 +1.2 +0.9 +0.8
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.1 +0.2 +1.8 +0.8 +0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.9 +0.9 +0.5 +0.8 +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM +1.1 +0.4 +1.2 +0.3 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.5 +0.3 +0.3 +0.3 +1.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.5 +0.7 +1.1 +0.7 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.5 +0.8 +0.1 +0.9 +0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.6 +1.0 +0.6 +1.1 +1.0
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +1.1 +0.8 +0.5 +1.1 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.3 +1.0 +0.8 +0.8 +0.7
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +1.3 +0.9 +0.8 +1.1 +1.0
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.1 +1.1 +0.9 +1.0 +1.0
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 +1.2 +1.1 +1.0 +1.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.5 +1.0 +2.2 +1.8 +0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +1.4 +1.2 +1.0 +1.9 +0.6
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +1.1 +1.5 +2.0 +1.5 +0.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.1 +1.4 +1.0 +1.7 +0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 +1.3 +2.6 +1.8 +1.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.4 +1.1 +1.5 +1.7 +1.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.1 +1.7 +1.5 +1.9 +1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.1 +1.8 +1.3 +1.7 +1.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.0 +1.9 +1.9 +1.8 +2.0
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