Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

Add gene:

Number of genes on each side:  

Top 30 experiments (either direction), sorted by average fitness

Or view all 128 experiments or choose conditions or try the comparative fitness browser

500 ntH281DRAFT_05756 and H281DRAFT_05757 are separated by 72 nucleotidesH281DRAFT_05757 and H281DRAFT_05758 are separated by 70 nucleotidesH281DRAFT_05758 and H281DRAFT_05759 are separated by 419 nucleotidesH281DRAFT_05759 and H281DRAFT_05760 are separated by 94 nucleotides H281DRAFT_05756: H281DRAFT_05756 - RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG, at 31,634 to 32,368 _05756 H281DRAFT_05757: H281DRAFT_05757 - Predicted nuclease of the RNAse H fold, HicB family, at 32,441 to 32,851 _05757 H281DRAFT_05758: H281DRAFT_05758 - HicA toxin of toxin-antitoxin,, at 32,922 to 33,029 _05758 H281DRAFT_05759: H281DRAFT_05759 - flagella synthesis protein FlgN, at 33,449 to 33,895 _05759 H281DRAFT_05760: H281DRAFT_05760 - anti-sigma-28 factor, FlgM family, at 33,990 to 34,343 _05760
Group Condition H281DRAFT_05756 H281DRAFT_05757 H281DRAFT_05758 H281DRAFT_05759 H281DRAFT_05760
ecofab LB in EcoFAB_3.5mL -0.2 -1.1 N.D. -1.4 N.D.
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.8 -0.7 N.D. -2.7 N.D.
phage Bu1_100 -1.1 -1.0 N.D. -0.5 N.D.
carbon source Dodecandioic (C) -0.6 -0.2 N.D. -1.8 N.D.
carbon source Protocatechuic Acid (C) -0.7 -0.6 N.D. -1.1 N.D.
carbon source Malonic (C) +0.8 +0.4 N.D. -3.2 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.4 -1.0 N.D. -1.2 N.D.
carbon source Gallic Acid (C) +0.4 -0.5 N.D. -1.5 N.D.
carbon source butyrate (C) -1.4 +0.6 N.D. -0.4 N.D.
carbon source D-Glucose (C) +0.7 -0.4 N.D. -1.3 N.D.
carbon source Malonic (C) +0.7 -0.6 N.D. -1.0 N.D.
carbon source D-Glucose 20 mM (C) +0.9 -0.5 N.D. -1.3 N.D.
phage Bu1_10 +0.5 -1.8 N.D. +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.9 N.D. -1.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 -0.5 N.D. -0.6 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +1.1 -0.4 N.D. -0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.3 -0.3 N.D. -0.5 N.D.
carbon source Azelaic (C) -1.1 +0.9 N.D. +0.7 N.D.
control NoPhageControl +0.5 -0.9 N.D. +1.0 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.9 -0.7 N.D. +0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.1 -0.1 N.D. -1.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.6 -0.1 N.D. -0.5 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.1 +0.9 N.D. -1.0 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.2 -0.2 N.D. -0.2 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +1.6 +0.4 N.D. +0.0 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +1.3 -0.1 N.D. +0.9 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.2 +0.6 N.D. +0.4 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +2.5 -0.3 N.D. +0.0 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.9 +1.9 N.D. -0.4 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +1.0 +2.0 N.D. -0.3 N.D.
remove
H281DRAFT_05756
plot		 remove
H281DRAFT_05757
plot		 remove
H281DRAFT_05758		 remove
H281DRAFT_05759
plot		 remove
H281DRAFT_05760
plot