Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05720 and H281DRAFT_05721 are separated by 201 nucleotidesH281DRAFT_05721 and H281DRAFT_05722 are separated by 1 nucleotidesH281DRAFT_05722 and H281DRAFT_05723 are separated by 53 nucleotidesH281DRAFT_05723 and H281DRAFT_05724 are separated by 121 nucleotides H281DRAFT_05720: H281DRAFT_05720 - phenylacetate-CoA ligase, at 139,050 to 140,354 _05720 H281DRAFT_05721: H281DRAFT_05721 - acyl-CoA thioesterase, at 140,556 to 141,044 _05721 H281DRAFT_05722: H281DRAFT_05722 - 1,2-epoxyphenylacetyl-CoA isomerase (EC 5.3.3.18) (from data), at 141,046 to 141,837 _05722 H281DRAFT_05723: H281DRAFT_05723 - bifunctional thiolase PaaJ: 3-oxo-5,6-didehydrosuberyl-CoA thiolase (EC 2.3.1.223); 3-oxoadipyl-CoA thiolase (EC 2.3.1.174) (from data), at 141,891 to 143,093 _05723 H281DRAFT_05724: H281DRAFT_05724 - 3-oxo-5,6-didehydrosuberyl-CoA semialdehyde dehydrogenase PaaZ (EC:1.2.1.91) (from data), at 143,215 to 144,915 _05724
Group Condition H281DRAFT_05720 H281DRAFT_05721 H281DRAFT_05722 H281DRAFT_05723 H281DRAFT_05724
carbon source Phenylacetic (C) -5.7 -1.6 -6.0 -5.2 -4.7
carbon source Phenylacetic (C) -3.5 -1.3 -3.0 -3.6 -2.8
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.2 +0.1 -0.3 +0.1 -0.7
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.3 +0.2 +0.1 -0.2 -0.7
ecofab LB in EcoFAB_3.5mL +0.0 +0.3 +0.1 +0.4 -1.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 +0.3 +0.3 +0.1 -0.9
carbon source adipate (C) -0.2 -0.1 +0.3 -0.3 +0.9
carbon source Valeric (C) +0.3 -0.1 +0.3 -0.3 +0.5
carbon source Protocatechuic Acid (C) +0.1 -0.2 +0.2 +0.1 +0.7
carbon source Azelaic (C) -0.0 -0.1 +0.0 +0.3 +0.8
phage Bu1_10 -0.1 +0.2 +0.4 +0.3 +0.2
carbon source Hexanoic (C) -0.0 +0.2 -0.2 +0.3 +0.9
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.0 +0.3 +0.5 +0.3 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 +0.2 +0.4 +0.1 +0.3
carbon source Hexanoic (C) +0.0 +0.0 +0.5 +0.2 +0.6
carbon source Protocatechuic Acid (C) +0.0 +0.0 -0.1 +0.4 +1.0
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.2 +0.1 +0.4 +0.3 +0.4
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.2 +0.1 +0.4 +0.4 +0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 +0.6 +0.2 +0.1 +0.3
carbon source 2-furoic (C) -0.0 +0.2 +0.2 +0.4 +0.7
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.2 +0.3 +0.4 +0.1 +0.6
carbon source 2'-Deoxyinosine 10 mM (C) +0.1 +0.3 +0.2 +0.0 +0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.0 +0.4 +0.5 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.1 +0.5 +0.3 +0.7
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.3 +0.3 +0.3 -0.0 +0.9
carbon source 2'-Deoxyinosine 5 mM (C) +0.1 +0.4 +0.2 +0.2 +0.9
carbon source 2'-Deoxyinosine 5 mM (C) -0.1 +0.4 +0.3 +0.1 +1.0
carbon source 2'-Deoxyinosine 10 mM (C) +0.2 +0.1 +0.6 +0.1 +0.9
carbon source adipate (C) -0.0 -0.0 +0.9 +0.1 +1.0
carbon source 4-Hydroxybenzoic Acid (C) -0.1 -0.0 -0.5 +0.7 +4.2
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