Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05652 and H281DRAFT_05653 are separated by 75 nucleotidesH281DRAFT_05653 and H281DRAFT_05654 overlap by 4 nucleotidesH281DRAFT_05654 and H281DRAFT_05655 are separated by 70 nucleotidesH281DRAFT_05655 and H281DRAFT_05656 are separated by 51 nucleotides H281DRAFT_05652: H281DRAFT_05652 - histidinol dehydrogenase, at 73,959 to 75,281 _05652 H281DRAFT_05653: H281DRAFT_05653 - hypothetical protein, at 75,357 to 75,602 _05653 H281DRAFT_05654: H281DRAFT_05654 - histidinol phosphate aminotransferase apoenzyme, at 75,599 to 76,669 _05654 H281DRAFT_05655: H281DRAFT_05655 - imidazoleglycerol-phosphate dehydratase, at 76,740 to 77,327 _05655 H281DRAFT_05656: H281DRAFT_05656 - multiple antibiotic resistance protein, at 77,379 to 77,999 _05656
Group Condition H281DRAFT_05652 H281DRAFT_05653 H281DRAFT_05654 H281DRAFT_05655 H281DRAFT_05656
carbon source adipate (C) N.D. -1.1 -0.0 N.D. -0.3
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. -0.7 +0.1 N.D. -0.8
carbon source 2'-Deoxyinosine 10 mM (C) N.D. -0.9 +0.2 N.D. -0.6
carbon source D-Glucose (C) N.D. -0.6 -0.1 N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.7 +0.1 N.D. -0.4
carbon source D-Glucose (C) N.D. -0.2 -0.2 N.D. -0.6
lb LB N.D. -0.7 +0.1 N.D. -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. -0.2 +0.1 N.D. -0.8
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -0.8 +0.3 N.D. -0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. -0.8 +0.5 N.D. -0.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. +0.2 +0.2 N.D. -0.6
carbon source Hexanoic (C) N.D. -0.4 -0.2 N.D. +0.4
carbon source succinate (C) N.D. +0.6 -0.4 N.D. -0.4
phage Bu1_100 N.D. -0.1 -0.5 N.D. +0.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM N.D. +0.7 -0.3 N.D. -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. +0.4 +0.5 N.D. -0.7
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. +0.3 +0.3 N.D. -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.3 +0.7 N.D. -0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. -0.4 +0.8 N.D. +0.1
carbon source Valeric (C) N.D. -0.1 -0.1 N.D. +0.8
carbon source adipate (C) N.D. +0.7 +0.2 N.D. -0.1
carbon source Dodecandioic (C) N.D. +0.3 -0.1 N.D. +0.6
phage Bu1_100 N.D. +0.4 +0.2 N.D. +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.1 +0.0 N.D. +1.1
carbon source 3-hydroxybutyric (C) N.D. +0.8 +0.1 N.D. +0.1
carbon source Hexanoic (C) N.D. +0.3 +0.3 N.D. +0.5
carbon source Malonic (C) N.D. +0.9 -0.0 N.D. +0.3
carbon source butyrate (C) N.D. +0.9 +0.1 N.D. +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. +0.9 +0.7 N.D. -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. +0.6 +0.2 N.D. +1.2
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