Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05560 and H281DRAFT_05561 are separated by 240 nucleotidesH281DRAFT_05561 and H281DRAFT_05562 are separated by 32 nucleotidesH281DRAFT_05562 and H281DRAFT_05563 are separated by 191 nucleotidesH281DRAFT_05563 and H281DRAFT_05564 are separated by 51 nucleotides H281DRAFT_05560: H281DRAFT_05560 - putative acyl-CoA dehydrogenase, at 151,559 to 153,277 _05560 H281DRAFT_05561: H281DRAFT_05561 - transcriptional regulator, TetR family, at 153,518 to 154,189 _05561 H281DRAFT_05562: H281DRAFT_05562 - indolepyruvate ferredoxin oxidoreductase, at 154,222 to 157,713 _05562 H281DRAFT_05563: H281DRAFT_05563 - Cys-tRNA(Pro) deacylase, prolyl-tRNA editing enzyme YbaK/EbsC, at 157,905 to 158,381 _05563 H281DRAFT_05564: H281DRAFT_05564 - Aspartate/methionine/tyrosine aminotransferase, at 158,433 to 159,611 _05564
Group Condition H281DRAFT_05560 H281DRAFT_05561 H281DRAFT_05562 H281DRAFT_05563 H281DRAFT_05564
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -4.1 +0.1 -0.3 +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 -2.7 -0.2 -0.9 +0.3
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -3.2 -0.0 -0.2 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.4 -2.3 -0.1 -0.2 -0.1
carbon source Phenylacetic (C) -0.0 +0.0 -0.6 -1.5 -0.7
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.2 -1.4 +0.2 -1.7 +0.1
carbon source Phenylacetic (C) +0.2 +0.0 -0.9 -1.3 -0.6
carbon source butyrate (C) -0.2 +1.9 +0.0 -3.6 +0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.2 -0.7 +0.2 -1.0 -0.1
carbon source Valeric (C) -0.4 +1.6 -1.4 -0.2 -0.9
carbon source Valeric (C) -0.7 +1.9 -1.4 +0.7 -1.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -2.0 -0.1 +0.8 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 -2.2 +0.0 +1.2 +0.1
carbon source adipate (C) +0.4 +0.7 -0.3 -1.2 -0.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.1 +2.1 -0.2 -0.9 -0.2
carbon source butyrate (C) -0.3 +1.8 +0.2 -0.4 -0.0
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.2 +2.0 +0.1 -0.2 -0.2
carbon source Azelaic (C) +0.0 +2.1 +0.2 -0.8 +0.0
carbon source Malonic (C) -0.1 +0.5 +0.1 +1.7 -0.2
carbon source 3-hydroxybutyric (C) +0.1 +2.9 +0.0 -0.2 -0.2
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.0 +2.9 -0.1 -0.1 -0.1
carbon source propionate (C) +0.2 +2.8 +0.1 -0.4 +0.1
carbon source Sebacic (C) -0.0 +2.4 -0.0 +0.7 +0.1
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.1 +2.8 -0.1 +0.1 +0.1
carbon source Suberic (C) +0.2 +3.1 +0.1 -0.1 -0.2
carbon source propionate (C) +0.1 +2.8 +0.3 +0.3 +0.0
carbon source Pimelic (C) +0.1 +3.0 -0.0 +0.4 +0.1
carbon source 3-hydroxybutyric (C) +0.1 +2.7 +0.0 +1.1 +0.1
carbon source Hexanoic (C) +0.0 +6.5 -0.6 -0.1 -0.3
carbon source Hexanoic (C) -0.0 +6.5 -0.5 +0.4 -0.4
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