Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05476 and H281DRAFT_05477 are separated by 3 nucleotidesH281DRAFT_05477 and H281DRAFT_05478 are separated by 216 nucleotidesH281DRAFT_05478 and H281DRAFT_05479 are separated by 360 nucleotidesH281DRAFT_05479 and H281DRAFT_05480 are separated by 69 nucleotides H281DRAFT_05476: H281DRAFT_05476 - Short-chain dehydrogenase, at 57,488 to 58,498 _05476 H281DRAFT_05477: H281DRAFT_05477 - Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family, at 58,502 to 60,277 _05477 H281DRAFT_05478: H281DRAFT_05478 - hypothetical protein, at 60,494 to 60,793 _05478 H281DRAFT_05479: H281DRAFT_05479 - hypothetical protein, at 61,154 to 61,339 _05479 H281DRAFT_05480: H281DRAFT_05480 - Nucleotide-binding universal stress protein, UspA family, at 61,409 to 61,849 _05480
Group Condition H281DRAFT_05476 H281DRAFT_05477 H281DRAFT_05478 H281DRAFT_05479 H281DRAFT_05480
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.0 +0.0 -0.3 N.D. -1.6
phage Bu1_100 -0.7 -0.4 -0.9 N.D. -0.5
carbon source Hexanoic (C) -2.5 -0.1 +0.5 N.D. -0.0
phage Bu1_10 -1.6 -0.8 +0.3 N.D. +0.1
carbon source 3-hydroxybutyric (C) -2.2 +0.0 +0.2 N.D. +0.1
carbon source Malonic (C) -1.3 +0.3 +0.2 N.D. -1.0
phage Bu1_100 -0.6 -0.7 +0.1 N.D. -0.2
carbon source Sebacic (C) -0.2 +0.1 +0.4 N.D. -1.1
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -1.6 +0.5 +0.2 N.D. +0.1
carbon source 2-Deoxy-D-Ribose 20 mM (C) -1.0 +0.4 -0.1 N.D. -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.7 +0.4 -0.1 N.D. -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.0 +0.1 -0.5 N.D. +0.6
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -1.0 +0.0 -0.1 N.D. +0.4
carbon source 2-Deoxy-D-Ribose (C) -0.5 -0.2 -0.3 N.D. +0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.1 +0.1 +0.2 N.D. +0.2
ecofab LB in EcoFAB_3.5mL -1.1 +0.4 +0.1 N.D. +0.0
carbon source 4-Hydroxybenzoic Acid (C) -0.9 +0.1 +0.5 N.D. -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.5 +0.2 +0.1 N.D. -0.9
carbon source adipate (C) +0.0 +0.3 +0.4 N.D. -0.8
carbon source 3-Hydroxypropionate (C) +0.8 -0.2 -0.6 N.D. -0.0
carbon source butyrate (C) +0.4 +0.3 +0.0 N.D. -0.8
carbon source adipate (C) -0.7 +0.4 +0.2 N.D. +0.4
carbon source Valeric (C) +0.6 +0.2 +0.3 N.D. -0.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.3 -0.4 +0.2 N.D. +0.8
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.3 +0.3 +0.6 N.D. -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +1.0 +0.1 -0.7 N.D. +0.6
carbon source Protocatechuic Acid (C) +0.6 +0.2 -0.1 N.D. +0.7
carbon source p-Coumaric (C) +0.7 +0.2 +0.5 N.D. +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.0 +0.6 N.D. +1.0
carbon source Valeric (C) +0.5 +0.5 +0.8 N.D. +0.2
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