Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05475 and H281DRAFT_05476 overlap by 1 nucleotidesH281DRAFT_05476 and H281DRAFT_05477 are separated by 3 nucleotidesH281DRAFT_05477 and H281DRAFT_05478 are separated by 216 nucleotidesH281DRAFT_05478 and H281DRAFT_05479 are separated by 360 nucleotides H281DRAFT_05475: H281DRAFT_05475 - Choline dehydrogenase, at 55,833 to 57,488 _05475 H281DRAFT_05476: H281DRAFT_05476 - Short-chain dehydrogenase, at 57,488 to 58,498 _05476 H281DRAFT_05477: H281DRAFT_05477 - Glucoamylase (glucan-1,4-alpha-glucosidase), GH15 family, at 58,502 to 60,277 _05477 H281DRAFT_05478: H281DRAFT_05478 - hypothetical protein, at 60,494 to 60,793 _05478 H281DRAFT_05479: H281DRAFT_05479 - hypothetical protein, at 61,154 to 61,339 _05479
Group Condition H281DRAFT_05475 H281DRAFT_05476 H281DRAFT_05477 H281DRAFT_05478 H281DRAFT_05479
phage Bu1_10 -0.1 -1.6 -0.8 +0.3 N.D.
carbon source Hexanoic (C) +0.1 -2.5 -0.1 +0.5 N.D.
phage Bu1_100 +0.0 -0.7 -0.4 -0.9 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 -2.0 +0.0 -0.3 N.D.
carbon source 3-hydroxybutyric (C) +0.1 -2.2 +0.0 +0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 -1.0 +0.1 -0.5 N.D.
phage Bu1_100 -0.1 -0.6 -0.7 +0.1 N.D.
carbon source Malonic (C) -0.4 -1.3 +0.3 +0.2 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.2 -1.6 +0.5 +0.2 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.2 -1.1 +0.1 +0.2 N.D.
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.0 -1.0 +0.4 -0.1 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.1 -0.9 +0.3 -0.1 N.D.
ecofab LB in EcoFAB_3.5mL +0.1 -1.1 +0.4 +0.1 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.2 -0.7 +0.2 -0.2 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.2 -0.7 +0.4 -0.1 N.D.
carbon source 4-Hydroxybenzoic Acid (C) -0.0 -0.9 +0.1 +0.5 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 -0.7 +0.4 -0.2 N.D.
carbon source adipate (C) -0.2 -0.7 +0.4 +0.2 N.D.
carbon source butyrate (C) -0.8 -0.1 +0.3 +0.3 N.D.
carbon source 3-Hydroxypropionate (C) -0.1 +0.8 -0.2 -0.6 N.D.
carbon source Hydroxy-L-Proline (C) -0.2 +0.8 -0.5 +0.1 N.D.
carbon source Protocatechuic Acid (C) -0.3 +0.8 -0.1 -0.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.0 +1.0 +0.1 -0.7 N.D.
carbon source 3-hydroxybutyric (C) -0.3 +0.7 +0.2 -0.2 N.D.
carbon source Valeric (C) -0.3 +0.6 +0.2 +0.3 N.D.
carbon source Malonic (C) -0.0 +0.8 +0.3 -0.1 N.D.
carbon source propionate (C) -0.2 +0.9 -0.1 +0.4 N.D.
carbon source p-Coumaric (C) -0.1 +0.7 +0.2 +0.5 N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.2 +0.3 +0.3 +0.6 N.D.
carbon source Valeric (C) -0.1 +0.5 +0.5 +0.8 N.D.
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