Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05459 and H281DRAFT_05460 are separated by 121 nucleotidesH281DRAFT_05460 and H281DRAFT_05461 are separated by 275 nucleotidesH281DRAFT_05461 and H281DRAFT_05462 are separated by 77 nucleotidesH281DRAFT_05462 and H281DRAFT_05463 are separated by 102 nucleotides H281DRAFT_05459: H281DRAFT_05459 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 39,548 to 40,288 _05459 H281DRAFT_05460: H281DRAFT_05460 - 3-(3-hydroxy-phenyl)propionate hydroxylase, at 40,410 to 41,876 _05460 H281DRAFT_05461: H281DRAFT_05461 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 42,152 to 43,003 _05461 H281DRAFT_05462: H281DRAFT_05462 - hypothetical protein, at 43,081 to 43,347 _05462 H281DRAFT_05463: H281DRAFT_05463 - acetyl esterase, at 43,450 to 44,244 _05463
Group Condition H281DRAFT_05459 H281DRAFT_05460 H281DRAFT_05461 H281DRAFT_05462 H281DRAFT_05463
phage Bu1_100 -0.5 +0.2 -0.1 -0.6 +0.1
phage Bu1_100 -0.3 -0.0 -0.0 -0.4 +0.2
carbon source Sebacic (C) -0.2 -0.4 +0.2 +0.1 -0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.4 -0.1 -0.0 -0.3 -0.3
carbon source D-Glucose 20 mM (C) +0.1 +0.0 +0.3 -0.5 -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.2 -0.0 +0.2 -0.5 -0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.5 -0.2 +0.0 -0.4 -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.3 +0.2 -0.1 -0.0 -0.5
carbon source Hexanoic (C) -0.5 +0.0 +0.3 +0.4 -0.2
carbon source succinate (C) +0.3 -0.3 -0.2 +0.2 +0.1
carbon source 2-Deoxy-D-Ribose (C) -0.2 +0.1 -0.3 +0.4 +0.1
carbon source adipate (C) +0.2 +0.1 -0.3 +0.3 -0.1
carbon source Phenylacetic (C) -0.5 +0.1 +0.2 +0.4 +0.1
carbon source 3-hydroxybutyric (C) -0.3 -0.0 -0.0 +0.6 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 +0.1 +0.0 +0.7 -0.4
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.4 +0.0 +0.4 -0.3 -0.1
carbon source 2'-Deoxyinosine 5 mM (C) +0.5 +0.1 +0.1 -0.1 -0.3
carbon source 2'-Deoxyinosine 10 mM (C) +0.5 +0.1 +0.2 -0.4 -0.1
phage Bu1_10 -0.3 +0.3 -0.1 +0.2 +0.3
carbon source Gallic Acid (C) -0.1 -0.1 +0.1 +0.6 +0.1
carbon source 4-Hydroxybenzoic Acid (C) -0.1 +0.0 -0.1 +0.9 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.3 -0.2 +0.4 +0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.3 -0.1 +0.3 -0.1 +0.3
carbon source adipate (C) -0.1 -0.1 +0.6 +0.2 +0.3
carbon source Hexanoic (C) +0.4 -0.1 +0.2 +0.3 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.2 +0.3 +0.6 -0.2
carbon source Protocatechuic Acid (C) +0.0 +0.0 +0.5 +0.4 +0.0
carbon source Suberic (C) +0.4 +0.1 +0.2 +0.3 +0.0
carbon source L-Glutamic (C) +0.0 +0.1 +0.2 +0.7 +0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.2 +0.2 +0.3 +0.6 +0.0
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