Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05435 and H281DRAFT_05436 are separated by 224 nucleotidesH281DRAFT_05436 and H281DRAFT_05437 are separated by 49 nucleotidesH281DRAFT_05437 and H281DRAFT_05438 are separated by 812 nucleotidesH281DRAFT_05438 and H281DRAFT_05439 are separated by 30 nucleotides H281DRAFT_05435: H281DRAFT_05435 - DNA-binding transcriptional regulator, LysR family, at 12,551 to 13,495 _05435 H281DRAFT_05436: H281DRAFT_05436 - Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family, at 13,720 to 14,712 _05436 H281DRAFT_05437: H281DRAFT_05437 - Sugar phosphate permease, at 14,762 to 16,114 _05437 H281DRAFT_05438: H281DRAFT_05438 - transcriptional regulator, IclR family, at 16,927 to 17,739 _05438 H281DRAFT_05439: H281DRAFT_05439 - Catechol 2,3-dioxygenase, at 17,770 to 18,468 _05439
Group Condition H281DRAFT_05435 H281DRAFT_05436 H281DRAFT_05437 H281DRAFT_05438 H281DRAFT_05439
carbon source Protocatechuic Acid (C) +0.2 -0.5 +0.0 -1.7 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -1.0 -0.4 -1.1 +0.6 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.6 +0.5 -1.0 -0.6 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.9 +0.3 -0.4 -0.7 N.D.
carbon source Hexanoic (C) -0.0 -0.1 -0.2 -1.1 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.6 -0.2 -1.1 +0.5 N.D.
carbon source Malonic (C) -0.1 -0.2 +0.0 -0.9 N.D.
phage Bu1_100 +0.2 -0.1 -0.5 -0.6 N.D.
carbon source D-Glucose (C) -0.0 +0.3 -0.1 -1.0 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 +0.2 -0.5 -0.6 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.2 -0.3 -0.3 +0.7 N.D.
carbon source Malonic (C) -0.4 -0.3 -0.3 +0.9 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM -0.3 -0.2 +0.1 +0.7 N.D.
carbon source D-Glucose (C) -0.1 -0.1 -0.3 +0.7 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.1 -0.4 -0.3 +0.9 N.D.
carbon source adipate (C) +0.3 -0.4 -0.2 +0.6 N.D.
carbon source Protocatechuic Acid (C) -0.2 -0.3 +0.1 +0.9 N.D.
carbon source 2'-Deoxyinosine 10 mM (C) +0.1 -0.3 +0.2 +0.7 N.D.
carbon source Hexanoic (C) +0.1 +0.0 -0.5 +1.0 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.1 -0.2 +0.3 +0.8 N.D.
carbon source Gallic Acid (C) -0.0 -0.2 +0.4 +0.8 N.D.
ecofab LB in EcoFAB_3.5mL +0.1 -0.0 +0.2 +0.9 N.D.
carbon source D-Glucose 20 mM (C) +0.3 +0.0 -0.2 +1.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.4 +0.0 +0.5 N.D.
carbon source Protocatechuic Acid (C) +0.3 -0.1 +0.4 +0.7 N.D.
carbon source 2-Deoxy-D-Ribose (C) +0.0 +0.1 +0.4 +0.7 N.D.
carbon source 2-Deoxy-D-Ribose (C) +0.3 +0.2 +0.0 +0.8 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.1 +0.1 +0.1 +1.2 N.D.
carbon source p-Coumaric (C) +0.2 -0.0 +0.2 +1.0 N.D.
phage Bu1_100 +0.6 -0.2 +0.0 +1.4 N.D.
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