Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05429 and H281DRAFT_05430 are separated by 25 nucleotidesH281DRAFT_05430 and H281DRAFT_05431 overlap by 4 nucleotidesH281DRAFT_05431 and H281DRAFT_05432 overlap by 8 nucleotidesH281DRAFT_05432 and H281DRAFT_05433 are separated by 73 nucleotides H281DRAFT_05429: H281DRAFT_05429 - Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit, at 4,703 to 6,001 _05429 H281DRAFT_05430: H281DRAFT_05430 - amino acid/amide ABC transporter ATP-binding protein 2, HAAT family, at 6,027 to 6,734 _05430 H281DRAFT_05431: H281DRAFT_05431 - amino acid/amide ABC transporter membrane protein 2, HAAT family /amino acid/amide ABC transporter ATP-binding protein 1, HAAT family, at 6,731 to 8,593 _05431 H281DRAFT_05432: H281DRAFT_05432 - amino acid/amide ABC transporter membrane protein 1, HAAT family, at 8,586 to 9,419 _05432 H281DRAFT_05433: H281DRAFT_05433 - amino acid/amide ABC transporter substrate-binding protein, HAAT family (TC 3.A.1.4.-), at 9,493 to 10,656 _05433
Group Condition H281DRAFT_05429 H281DRAFT_05430 H281DRAFT_05431 H281DRAFT_05432 H281DRAFT_05433
phage Bu1_10 +0.1 -0.8 -0.1 -0.9 +0.3
carbon source Malonic (C) -0.1 -0.7 -0.2 -0.2 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.1 -0.8 +0.0 -0.1 -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.0 -0.5 +0.1 -0.3 -0.2
carbon source Hydroxy-L-Proline (C) -0.0 -0.0 -0.3 -0.4 -0.2
carbon source propionate (C) +0.1 -0.2 -0.3 -0.3 -0.2
carbon source D-Galactose (C) -0.0 +0.2 -0.1 -0.7 -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.2 -0.5 -0.1 -0.2 -0.0
carbon source 2'-Deoxyinosine 5 mM (C) +0.0 -0.2 +0.2 -0.6 +0.0
carbon source adipate (C) +0.1 -0.1 -0.6 +0.1 -0.1
carbon source D-Galactose (C) -0.1 -0.2 -0.1 -0.4 +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.0 -0.3 +0.2 -0.5 -0.0
phage Bu1_100 +0.1 +0.4 -0.4 -0.9 +0.2
carbon source D-Glucose (C) -0.1 +0.4 -0.3 -0.3 +0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 -0.5 +0.1 +0.3 -0.1
carbon source 2-Deoxy-D-Ribose (C) +0.2 -0.3 +0.0 +0.3 -0.2
carbon source acetate (C) -0.0 -0.5 +0.1 +0.3 +0.0
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.1 -0.1 +0.4 -0.1 -0.3
carbon source Hexanoic (C) -0.1 -0.4 +0.1 +0.5 -0.0
carbon source 2'-Deoxyinosine 10 mM (C) +0.1 +0.4 +0.1 -0.2 -0.3
carbon source Gallic Acid (C) -0.1 +0.4 +0.1 -0.3 +0.2
carbon source D,L-Lactate (C) +0.0 +0.5 +0.2 -0.2 -0.1
carbon source p-Coumaric (C) +0.0 +0.4 -0.2 +0.2 +0.1
carbon source butyrate (C) +0.2 +0.2 -0.2 +0.6 -0.1
carbon source adipate (C) +0.0 +0.3 -0.1 +0.5 +0.0
carbon source Hexanoic (C) +0.3 +0.1 +0.5 -0.1 +0.0
carbon source succinate (C) -0.1 +0.7 +0.0 +0.2 -0.0
carbon source Valeric (C) +0.3 +0.5 +0.2 +0.1 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.4 -0.0 +0.4 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.0 +0.1 +0.5 +0.1
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