Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

Top 30 experiments (either direction), sorted by average fitness

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Group	Condition	H281DRAFT_05374	H281DRAFT_05375	H281DRAFT_05376	H281DRAFT_05377	H281DRAFT_05378
supernatant	LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x	-0.2	-0.1	-0.7	-0.3	-0.4
supernatant	Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x	-0.3	+0.1	-0.9	-0.2	-0.1
carbon source	adipate (C)	+0.4	+0.0	-2.1	+0.2	+0.1
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.7	+0.2	-0.6	-0.1	-0.0
carbon source	Protocatechuic Acid (C)	+0.2	+0.3	-1.2	-0.3	+0.1
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x	-0.5	-0.0	+0.4	-0.3	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.3	-0.0	-0.9	-0.2	+0.2
carbon source	acetate (C)	+0.3	+0.4	-1.0	-0.3	+0.1
carbon source	2'-Deoxyinosine 10 mM (C)	-0.2	-0.2	+0.7	-0.3	-0.2
carbon source	butyrate (C)	+0.3	+0.3	-0.8	-0.3	+0.5
carbon source	Valeric (C)	+0.1	+0.4	-0.8	+0.2	-0.0
in planta	Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days	-0.6	-0.1	+0.5	+0.2	+0.1
carbon source	2-Deoxy-D-Ribose 20 mM (C)	+0.2	-0.2	+0.8	-0.4	-0.1
carbon source	Azelaic (C)	+0.7	-0.1	-0.4	-0.1	+0.3
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	+0.1	-0.6	+0.9	+0.2	-0.2
carbon source	2-Deoxy-D-Ribose 20 mM (C)	+0.3	-0.2	+0.6	-0.2	-0.2
in planta	Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days	+0.3	+0.6	-0.4	-0.3	+0.3
control	NoPhageControl	+0.5	+0.7	-0.1	-0.1	-0.4
supernatant	RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x	+0.3	+0.0	+0.9	-0.4	-0.1
carbon source	Malonic (C)	+0.5	+0.2	+0.3	-0.4	+0.2
carbon source	2'-Deoxyinosine 5 mM (C)	-0.3	-0.2	+1.1	+0.3	+0.1
carbon source	2-Deoxyadenosine 5-monophosphate 2.5 mM (C)	+0.4	-0.1	+0.7	+0.2	-0.2
carbon source	Deoxyribonucleic from herring sperm 10 mg/mL (C)	-0.2	-0.1	+1.2	+0.1	+0.1
carbon source	2-Deoxyadenosine 5-monophosphate 5 mM (C)	+0.1	-0.2	+1.4	-0.0	-0.1
carbon source	2-Deoxy-D-Ribose 10 mM (C)	+0.3	-0.3	+1.2	+0.1	-0.2
carbon source	2-Deoxy-D-ribonic lithium salt 10 mM (C)	+0.2	+0.2	+1.1	-0.2	+0.0
carbon source	D-Glucose 20 mM (C)	+0.1	-0.1	+1.3	+0.3	-0.0
phage	Bu1_10	-0.2	+0.2	+1.4	+0.1	+0.1
phage	Bu1_100	+0.1	+0.4	+1.5	-0.4	-0.0
phage	Bu1_100	+0.1	+0.4	+2.0	+0.5	-0.3