Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05361 and H281DRAFT_05362 are separated by 333 nucleotidesH281DRAFT_05362 and H281DRAFT_05363 are separated by 36 nucleotidesH281DRAFT_05363 and H281DRAFT_05364 are separated by 14 nucleotidesH281DRAFT_05364 and H281DRAFT_05365 are separated by 72 nucleotides H281DRAFT_05361: H281DRAFT_05361 - type VI secretion system protein VasD, at 114,644 to 115,309 _05361 H281DRAFT_05362: H281DRAFT_05362 - Tetratricopeptide repeat-containing protein, at 115,643 to 116,329 _05362 H281DRAFT_05363: H281DRAFT_05363 - type VI secretion system protein ImpB, at 116,366 to 116,914 _05363 H281DRAFT_05364: H281DRAFT_05364 - type VI secretion system protein ImpC, at 116,929 to 118,419 _05364 H281DRAFT_05365: H281DRAFT_05365 - type VI secretion system secreted protein Hcp, at 118,492 to 118,995 _05365
Group Condition H281DRAFT_05361 H281DRAFT_05362 H281DRAFT_05363 H281DRAFT_05364 H281DRAFT_05365
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.4 -0.3 -0.5 -0.1 -0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.2 -0.4 -0.4 +0.0 -0.6
carbon source 2'-Deoxyinosine 5 mM (C) -0.1 -0.1 -0.2 -0.3 -0.4
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 -0.2 -0.1 -0.0 -0.7
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.1 -0.3 -0.1 -0.2 -0.4
carbon source 2'-Deoxyinosine 10 mM (C) +0.0 -0.1 -0.2 -0.3 -0.5
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.1 -0.2 -0.4 -0.0 -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.1 -0.1 -0.3 -0.2 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.0 -0.1 -0.2 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -0.1 -0.2 +0.1 -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.1 -0.2 +0.1 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.1 -0.1 +0.0 -0.6
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.1 +0.2 +0.2 +0.3 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.4 +0.1 +0.3 -0.0 +0.3
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.2 +0.3 +0.2 -0.3
carbon source succinate (C) +0.3 +0.2 +0.1 +0.2 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 +0.2 +0.2 +0.1 +0.4
carbon source Malonic (C) +0.2 +0.1 +0.3 +0.1 +0.3
carbon source propionate (C) +0.1 +0.3 +0.3 +0.2 +0.1
carbon source butyrate (C) +0.3 +0.2 +0.3 +0.2 +0.1
carbon source adipate (C) +0.3 +0.2 +0.3 +0.3 +0.2
lb LB +0.2 +0.3 +0.2 +0.3 +0.1
carbon source acetate (C) +0.3 +0.3 +0.3 +0.3 +0.2
carbon source Protocatechuic Acid (C) +0.3 +0.4 +0.4 +0.4 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 +0.2 +0.5 +0.3 +0.5
carbon source 3-Hydroxypropionate (C) +0.2 +0.4 +0.3 +0.3 +0.4
carbon source Protocatechuic Acid (C) +0.3 +0.5 +0.5 +0.3 +0.3
ecofab LB in EcoFAB_3.5mL +0.3 +0.5 +0.5 +0.6 +0.0
carbon source 3-Hydroxypropionate (C) +0.3 +0.6 +0.4 +0.2 +0.5
control NoPhageControl +0.3 +0.4 +0.6 +0.5 +0.6
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