Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05359 and H281DRAFT_05360 overlap by 4 nucleotidesH281DRAFT_05360 and H281DRAFT_05361 are separated by 121 nucleotidesH281DRAFT_05361 and H281DRAFT_05362 are separated by 333 nucleotidesH281DRAFT_05362 and H281DRAFT_05363 are separated by 36 nucleotides H281DRAFT_05359: H281DRAFT_05359 - type VI secretion system protein ImpK, at 112,400 to 113,179 _05359 H281DRAFT_05360: H281DRAFT_05360 - type VI secretion system protein ImpJ, at 113,176 to 114,522 _05360 H281DRAFT_05361: H281DRAFT_05361 - type VI secretion system protein VasD, at 114,644 to 115,309 _05361 H281DRAFT_05362: H281DRAFT_05362 - Tetratricopeptide repeat-containing protein, at 115,643 to 116,329 _05362 H281DRAFT_05363: H281DRAFT_05363 - type VI secretion system protein ImpB, at 116,366 to 116,914 _05363
Group Condition H281DRAFT_05359 H281DRAFT_05360 H281DRAFT_05361 H281DRAFT_05362 H281DRAFT_05363
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.3 -0.4 -0.4 -0.3 -0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.3 -0.2 -0.2 -0.4 -0.4
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.1 -0.4 -0.1 -0.3 -0.1
phage Bu1_100 -0.2 -0.2 -0.3 -0.1 -0.2
carbon source 2'-Deoxyinosine 5 mM (C) -0.1 -0.2 -0.2 -0.2 -0.1
carbon source 2'-Deoxyinosine 10 mM (C) -0.2 -0.3 +0.0 -0.2 -0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.1 -0.0 -0.1 -0.2 -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.2 +0.1 -0.2 -0.1 -0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.0 +0.2 -0.1 -0.1 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.5 -0.1 -0.4 +0.1 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.4 +0.0 -0.2 +0.1 +0.3
carbon source Suberic (C) +0.2 +0.3 +0.1 +0.2 +0.2
carbon source Malonic (C) +0.4 +0.2 +0.1 -0.1 +0.2
carbon source adipate (C) +0.1 +0.2 +0.1 +0.2 +0.2
carbon source Malonic (C) +0.1 +0.3 +0.2 +0.1 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 +0.1 +0.1 +0.2 +0.3
carbon source adipate (C) +0.1 +0.1 +0.3 +0.2 +0.3
carbon source D-Glucose (C) +0.1 +0.3 +0.0 +0.2 +0.4
carbon source 3-Hydroxypropionate (C) +0.2 -0.1 +0.2 +0.4 +0.3
carbon source Valeric (C) +0.2 +0.2 +0.2 +0.2 +0.3
carbon source propionate (C) +0.2 +0.3 +0.1 +0.3 +0.3
lb LB +0.2 +0.2 +0.2 +0.3 +0.2
carbon source butyrate (C) +0.1 +0.2 +0.3 +0.2 +0.3
carbon source acetate (C) +0.1 +0.3 +0.3 +0.3 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.6 -0.1 +0.0 +0.2 +0.5
carbon source 3-Hydroxypropionate (C) +0.3 -0.1 +0.3 +0.6 +0.4
carbon source Protocatechuic Acid (C) +0.2 +0.4 +0.3 +0.4 +0.4
ecofab LB in EcoFAB_3.5mL +0.4 +0.3 +0.3 +0.5 +0.5
carbon source Protocatechuic Acid (C) +0.3 +0.4 +0.3 +0.5 +0.5
control NoPhageControl +0.4 +0.5 +0.3 +0.4 +0.6
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