Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05277 and H281DRAFT_05278 overlap by 1 nucleotidesH281DRAFT_05278 and H281DRAFT_05279 overlap by 4 nucleotidesH281DRAFT_05279 and H281DRAFT_05280 overlap by 4 nucleotidesH281DRAFT_05280 and H281DRAFT_05281 are separated by 5 nucleotides H281DRAFT_05277: H281DRAFT_05277 - phosphoribosyl-dephospho-CoA transferase, at 19,923 to 20,630 _05277 H281DRAFT_05278: H281DRAFT_05278 - malonate decarboxylase gamma subunit, at 20,630 to 21,445 _05278 H281DRAFT_05279: H281DRAFT_05279 - malonate decarboxylase beta subunit, at 21,442 to 22,329 _05279 H281DRAFT_05280: H281DRAFT_05280 - malonate decarboxylase delta subunit, at 22,326 to 22,640 _05280 H281DRAFT_05281: H281DRAFT_05281 - triphosphoribosyl-dephospho-CoA synthase, at 22,646 to 23,608 _05281
Group Condition H281DRAFT_05277 H281DRAFT_05278 H281DRAFT_05279 H281DRAFT_05280 H281DRAFT_05281
carbon source Malonic (C) N.D. -1.9 -4.5 N.D. -3.5
carbon source Malonic (C) N.D. -2.9 -1.9 N.D. -3.3
carbon source Malonic (C) N.D. -1.8 -0.8 N.D. -1.4
carbon source Malonic (C) N.D. -1.6 -1.5 N.D. -0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM N.D. +0.5 +0.3 N.D. -4.2
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. -0.5 -1.3 N.D. -1.1
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.6 -2.0 N.D. -0.0
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. -0.5 -1.6 N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.2 -1.4 N.D. -0.9
carbon source 2'-Deoxyinosine 10 mM (C) N.D. +0.3 -0.9 N.D. -1.7
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.6 -0.7 N.D. -1.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.9 -1.1 N.D. -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.7 -0.2 N.D. -1.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM N.D. +0.3 -1.2 N.D. -1.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. -0.1 -0.8 N.D. -1.0
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.2 -1.3 N.D. -0.4
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. -0.2 -0.6 N.D. -1.1
ecofab LB in EcoFAB_3.5mL N.D. -0.4 -1.0 N.D. -0.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. -0.2 -0.4 N.D. -1.1
carbon source adipate (C) N.D. -0.6 +0.3 N.D. -1.2
carbon source Protocatechuic Acid (C) N.D. +0.4 -0.7 N.D. -0.9
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM N.D. +0.1 +0.4 N.D. -1.6
carbon source Sebacic (C) N.D. +0.1 -0.9 N.D. +0.8
carbon source 2-furoic (C) N.D. +0.3 -0.8 N.D. +0.7
carbon source Valeric (C) N.D. -0.3 -0.5 N.D. +1.2
carbon source acetate (C) N.D. -0.6 +0.5 N.D. +0.7
phage Bu1_10 N.D. +0.9 -0.5 N.D. +0.7
carbon source Protocatechuic Acid (C) N.D. -0.2 +0.7 N.D. +0.9
carbon source Valeric (C) N.D. -0.2 +0.9 N.D. +0.9
carbon source 4-Hydroxybenzoic Acid (C) N.D. -0.1 +0.6 N.D. +1.1
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