Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05264 and H281DRAFT_05265 are separated by 75 nucleotidesH281DRAFT_05265 and H281DRAFT_05266 are separated by 400 nucleotidesH281DRAFT_05266 and H281DRAFT_05267 are separated by 11 nucleotidesH281DRAFT_05267 and H281DRAFT_05268 are separated by 171 nucleotides H281DRAFT_05264: H281DRAFT_05264 - hypothetical protein, at 6,417 to 6,953 _05264 H281DRAFT_05265: H281DRAFT_05265 - hypothetical protein, at 7,029 to 8,192 _05265 H281DRAFT_05266: H281DRAFT_05266 - hypothetical protein, at 8,593 to 8,931 _05266 H281DRAFT_05267: H281DRAFT_05267 - 3-hydroxypropanoate dehydrogenase, at 8,943 to 9,527 _05267 H281DRAFT_05268: H281DRAFT_05268 - Alkylated DNA repair dioxygenase AlkB, at 9,699 to 10,313 _05268
Group Condition H281DRAFT_05264 H281DRAFT_05265 H281DRAFT_05266 H281DRAFT_05267 H281DRAFT_05268
phage Bu1_100 +0.2 -0.5 N.D. -2.4 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 -1.6 N.D. -0.7 -0.0
carbon source D-Glucose (C) -0.1 -0.7 N.D. -0.9 -0.0
carbon source butyrate (C) -0.3 -0.7 N.D. -1.0 +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.2 +0.0 N.D. -1.0 -0.1
carbon source propionate (C) -0.5 +0.4 N.D. -0.8 -0.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.3 -0.3 N.D. -0.8 -0.1
carbon source Malonic (C) -0.5 +0.3 N.D. -0.6 +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.0 +0.2 N.D. -0.8 -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.5 +0.2 N.D. -0.5 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.0 +0.4 N.D. -0.6 -0.4
carbon source acetate (C) -0.1 +0.4 N.D. -0.9 +0.0
carbon source Protocatechuic Acid (C) -0.2 +0.5 N.D. -0.6 -0.1
carbon source Hexanoic (C) -0.2 +0.4 N.D. -0.7 +0.1
lb LB +0.2 +0.3 N.D. -0.8 -0.0
carbon source D,L-Lactate (C) +0.4 -0.4 N.D. -0.2 -0.1
carbon source adipate (C) -0.2 +0.6 N.D. -0.7 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 -0.6 N.D. -0.5 +0.5
carbon source D-Glucose (C) +0.1 +0.8 N.D. -0.9 -0.1
carbon source Pimelic (C) -0.3 +0.6 N.D. -0.5 +0.0
carbon source 2'-Deoxyinosine 10 mM (C) +0.1 -0.6 N.D. +0.3 +0.3
carbon source adipate (C) +0.2 +0.3 N.D. +0.4 -0.6
carbon source D-Glucose 20 mM (C) +0.4 -0.3 N.D. +0.4 -0.2
carbon source D-Glucose (C) -0.4 +0.5 N.D. +0.5 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.4 +0.5 N.D. -0.6 +0.3
phage Bu1_100 -0.1 +0.9 N.D. -0.6 +0.3
carbon source Valeric (C) -0.3 +0.9 N.D. +0.0 +0.2
carbon source Hexanoic (C) +0.3 +0.7 N.D. +0.1 -0.1
carbon source succinate (C) +0.1 +0.9 N.D. +0.3 +0.0
phage Bu1_10 +0.6 +0.2 N.D. +0.6 -0.1
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