Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05152 and H281DRAFT_05153 are separated by 83 nucleotidesH281DRAFT_05153 and H281DRAFT_05154 are separated by 49 nucleotidesH281DRAFT_05154 and H281DRAFT_05155 are separated by 309 nucleotidesH281DRAFT_05155 and H281DRAFT_05156 are separated by 354 nucleotides H281DRAFT_05152: H281DRAFT_05152 - protein of unknown function (DUF1992), at 105,789 to 106,220 _05152 H281DRAFT_05153: H281DRAFT_05153 - tRNA(adenine34) deaminase, at 106,304 to 106,987 _05153 H281DRAFT_05154: H281DRAFT_05154 - murein tetrapeptidase LD-carboxypeptidase (EC:3.4.17.13). Serine peptidase. MEROPS family S66, at 107,037 to 107,963 _05154 H281DRAFT_05155: H281DRAFT_05155 - transcriptional regulator, GntR family, at 108,273 to 109,073 _05155 H281DRAFT_05156: H281DRAFT_05156 - nucleobase:cation symporter-1, NCS1 family, at 109,428 to 110,909 _05156
Group Condition H281DRAFT_05152 H281DRAFT_05153 H281DRAFT_05154 H281DRAFT_05155 H281DRAFT_05156
phage Bu1_10 N.D. N.D. -1.8 N.D. -0.0
carbon source Hexanoic (C) N.D. N.D. -1.1 N.D. -0.3
carbon source Hexanoic (C) N.D. N.D. -1.0 N.D. -0.3
carbon source adipate (C) N.D. N.D. -0.9 N.D. -0.4
phage Bu1_100 N.D. N.D. -1.7 N.D. +0.6
phage Bu1_100 N.D. N.D. -1.2 N.D. +0.2
carbon source Azelaic (C) N.D. N.D. -0.5 N.D. -0.4
carbon source Suberic (C) N.D. N.D. -0.8 N.D. -0.1
carbon source Valeric (C) N.D. N.D. -0.4 N.D. -0.4
carbon source Protocatechuic Acid (C) N.D. N.D. -0.8 N.D. -0.0
carbon source Protocatechuic Acid (C) N.D. N.D. -0.8 N.D. +0.1
carbon source Pimelic (C) N.D. N.D. -0.6 N.D. -0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. -0.3 N.D. -0.4
carbon source Malonic (C) N.D. N.D. -0.3 N.D. -0.4
carbon source adipate (C) N.D. N.D. -0.6 N.D. -0.0
carbon source propionate (C) N.D. N.D. -0.7 N.D. +0.1
carbon source acetate (C) N.D. N.D. -0.4 N.D. -0.2
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. +0.5 N.D. -0.5
carbon source D-Glucose 20 mM (C) N.D. N.D. +0.3 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.3 N.D. +0.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. +0.3 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.3 N.D. +0.4
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. N.D. +0.4 N.D. -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. N.D. +0.5 N.D. -0.2
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. +0.5 N.D. -0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. N.D. +0.6 N.D. -0.1
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. N.D. +0.7 N.D. -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM N.D. N.D. +0.3 N.D. +0.2
control NoPhageControl N.D. N.D. +0.4 N.D. +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM N.D. N.D. +0.3 N.D. +0.3
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