Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05104 and H281DRAFT_05105 are separated by 177 nucleotidesH281DRAFT_05105 and H281DRAFT_05106 are separated by 108 nucleotidesH281DRAFT_05106 and H281DRAFT_05107 are separated by 150 nucleotidesH281DRAFT_05107 and H281DRAFT_05108 are separated by 31 nucleotides H281DRAFT_05104: H281DRAFT_05104 - bacterial translation initiation factor 2 (bIF-2), at 48,448 to 51,393 _05104 H281DRAFT_05105: H281DRAFT_05105 - ribosome-binding factor A, at 51,571 to 51,936 _05105 H281DRAFT_05106: H281DRAFT_05106 - tRNA pseudouridine synthase B, at 52,045 to 52,980 _05106 H281DRAFT_05107: H281DRAFT_05107 - MFS transporter, DHA2 family, multidrug resistance protein, at 53,131 to 54,693 _05107 H281DRAFT_05108: H281DRAFT_05108 - membrane fusion protein, multidrug efflux system, at 54,725 to 55,981 _05108
Group Condition H281DRAFT_05104 H281DRAFT_05105 H281DRAFT_05106 H281DRAFT_05107 H281DRAFT_05108
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. N.D. -0.3 +0.1 -1.5
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. N.D. -0.2 +0.1 -1.0
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. -0.3 -0.4 -0.3
carbon source D-Galactose (C) N.D. N.D. -0.6 -0.1 -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. N.D. -0.8 +0.0 -0.2
carbon source Protocatechuic Acid (C) N.D. N.D. -0.7 -0.1 -0.0
carbon source Phenylacetic (C) N.D. N.D. -1.1 +0.0 +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM N.D. N.D. -0.3 +0.1 -0.4
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. -0.5 -0.3 +0.1
phage Bu1_100 N.D. N.D. -0.9 +0.0 +0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. +0.2 -0.1 -0.6
carbon source Phenylacetic (C) N.D. N.D. -1.0 +0.1 +0.4
carbon source Hexanoic (C) N.D. N.D. -0.4 -0.2 +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM N.D. N.D. -0.3 +0.2 -0.4
carbon source 2'-Deoxyinosine 10 mM (C) N.D. N.D. -0.6 +0.2 +0.0
carbon source 2'-Deoxyinosine 10 mM (C) N.D. N.D. -0.8 +0.2 +0.2
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. -0.6 +0.2 +0.0
carbon source D-Glucose (C) N.D. N.D. -0.4 -0.1 +0.3
carbon source Malonic (C) N.D. N.D. -0.5 +0.2 +0.1
carbon source D-Glucose (C) N.D. N.D. -0.4 -0.0 +0.3
phage Bu1_10 N.D. N.D. -0.5 +0.0 +0.3
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. -0.5 +0.3 +0.2
carbon source Malonic (C) N.D. N.D. -0.5 +0.1 +0.4
carbon source Valeric (C) N.D. N.D. -0.3 +0.4 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.4 +0.1 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. -0.4 +0.0 +0.4
phage Bu1_100 N.D. N.D. -0.5 +0.4 +0.3
carbon source Azelaic (C) N.D. N.D. -0.1 -0.1 +2.1
carbon source Dodecandioic (C) N.D. N.D. +0.1 +0.2 +1.7
carbon source Sebacic (C) N.D. N.D. -0.3 -0.1 +2.8
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