Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05096 and H281DRAFT_05097 are separated by 555 nucleotidesH281DRAFT_05097 and H281DRAFT_05098 are separated by 405 nucleotidesH281DRAFT_05098 and H281DRAFT_05099 are separated by 250 nucleotidesH281DRAFT_05099 and H281DRAFT_05100 are separated by 348 nucleotides H281DRAFT_05096: H281DRAFT_05096 - hypothetical protein, at 38,499 to 38,753 _05096 H281DRAFT_05097: H281DRAFT_05097 - putative transposase, at 39,309 to 39,710 _05097 H281DRAFT_05098: H281DRAFT_05098 - DNA-binding transcriptional regulator, LysR family, at 40,116 to 41,018 _05098 H281DRAFT_05099: H281DRAFT_05099 - Aspartate/methionine/tyrosine aminotransferase, at 41,269 to 42,495 _05099 H281DRAFT_05100: H281DRAFT_05100 - condensin subunit ScpB, at 42,844 to 43,977 _05100
Group Condition H281DRAFT_05096 H281DRAFT_05097 H281DRAFT_05098 H281DRAFT_05099 H281DRAFT_05100
carbon source Hydroxy-L-Proline (C) N.D. -1.6 -0.3 -0.1 N.D.
carbon source L-Glutamic (C) N.D. -0.5 -0.5 -0.1 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. -0.9 +0.1 -0.3 N.D.
carbon source 2'-Deoxyinosine 10 mM (C) N.D. -1.0 +0.4 -0.4 N.D.
phage Bu1_10 N.D. -0.7 +0.1 -0.1 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.9 +0.4 -0.1 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) N.D. -0.7 +0.4 -0.2 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -0.4 +0.5 -0.5 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. -0.7 +0.3 -0.1 N.D.
carbon source 2'-Deoxyinosine 10 mM (C) N.D. -0.8 +0.5 -0.0 N.D.
ecofab LB in EcoFAB_3.5mL N.D. -0.4 +0.3 -0.3 N.D.
carbon source Protocatechuic Acid (C) N.D. +0.2 -0.7 +0.1 N.D.
carbon source adipate (C) N.D. +0.4 -0.2 -0.4 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. -0.4 +0.6 -0.1 N.D.
carbon source Pimelic (C) N.D. +0.2 +0.5 -0.2 N.D.
carbon source Sebacic (C) N.D. +0.7 +0.4 -0.4 N.D.
carbon source propionate (C) N.D. +0.8 -0.1 +0.0 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. +0.4 +0.6 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.6 +0.3 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.6 +0.3 -0.1 N.D.
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.6 -0.0 +0.2 N.D.
carbon source butyrate (C) N.D. +0.5 +0.4 -0.0 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. +0.2 +0.6 +0.1 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. +0.6 +0.4 -0.2 N.D.
carbon source Glycerol (C) N.D. +0.4 +0.4 +0.1 N.D.
carbon source Hexanoic (C) N.D. +0.7 +0.6 -0.1 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. +0.5 +0.3 +0.2 N.D.
carbon source Phenylacetic (C) N.D. +0.7 +0.3 +0.1 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.6 +0.4 +0.2 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. +0.7 +0.6 +0.1 N.D.
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