Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05086 and H281DRAFT_05087 overlap by 4 nucleotidesH281DRAFT_05087 and H281DRAFT_05088 are separated by 54 nucleotidesH281DRAFT_05088 and H281DRAFT_05089 are separated by 4 nucleotidesH281DRAFT_05089 and H281DRAFT_05090 overlap by 4 nucleotides H281DRAFT_05086: H281DRAFT_05086 - DNA helicase/exodeoxyribonuclease V, beta subunit, at 26,981 to 30,682 _05086 H281DRAFT_05087: H281DRAFT_05087 - exodeoxyribonuclease V alpha subunit, at 30,679 to 33,003 _05087 H281DRAFT_05088: H281DRAFT_05088 - hypothetical protein, at 33,058 to 33,201 _05088 H281DRAFT_05089: H281DRAFT_05089 - ribosome-associated protein, at 33,206 to 33,610 _05089 H281DRAFT_05090: H281DRAFT_05090 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 33,607 to 34,932 _05090
Group Condition H281DRAFT_05086 H281DRAFT_05087 H281DRAFT_05088 H281DRAFT_05089 H281DRAFT_05090
carbon source Sebacic (C) -4.4 -2.8 +0.3 +0.5 +0.2
carbon source 4-Hydroxybenzoic Acid (C) -1.3 -3.2 -0.7 -0.3 -0.4
phage Bu1_100 -3.6 -1.7 -0.6 -0.0 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.8 -4.4 -0.0 +0.4 +0.2
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.3 -4.0 +0.3 -0.3 -0.3
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.2 -3.9 +0.1 -0.1 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -2.3 -1.8 +0.3 -0.7 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 -3.4 -0.1 -0.2 +0.2
carbon source D-Glucose (C) -0.7 -3.2 +0.1 -0.5 +0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -2.1 -1.3 +0.1 -0.3 -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.1 -3.3 +0.3 +0.0 +0.1
carbon source butyrate (C) -2.3 -1.0 +0.5 -1.0 -0.4
carbon source Hexanoic (C) -1.8 -1.8 +0.6 -0.6 -0.4
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -1.5 -1.4 +0.3 -1.1 -0.2
carbon source Valeric (C) -2.8 -2.0 +0.8 +0.5 -0.4
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -1.2 -3.0 +0.1 +0.3 -0.1
phage Bu1_10 -2.2 -1.8 +0.8 -0.1 -0.5
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -1.6 -0.7 +0.4 -0.5 -1.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM -1.8 -0.4 +0.3 -1.0 -0.6
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -3.1 -0.8 +0.2 +0.1 +0.2
carbon source 2'-Deoxyinosine 5 mM (C) -2.2 -1.7 +0.2 +0.3 +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -1.3 -1.6 +0.4 -0.0 -0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.0 -3.0 +0.6 +0.3 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.8 -1.9 +0.2 -0.0 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.7 -1.5 +0.4 +0.4 -0.4
ecofab LB in EcoFAB_3.5mL -1.5 -2.4 +0.5 +0.3 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.6 -1.8 +0.4 +0.4 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.8 -3.3 +1.1 +0.1 +0.5
carbon source 2'-Deoxyinosine 10 mM (C) -0.4 -2.5 +0.8 +0.4 +0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.1 -1.7 +0.7 +0.7 +1.0
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