Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_05000 and H281DRAFT_05001 overlap by 4 nucleotidesH281DRAFT_05001 and H281DRAFT_05002 overlap by 16 nucleotidesH281DRAFT_05002 and H281DRAFT_05003 overlap by 4 nucleotidesH281DRAFT_05003 and H281DRAFT_05004 overlap by 4 nucleotides H281DRAFT_05000: H281DRAFT_05000 - ATP synthase in type III secretion protein N, at 185,882 to 187,276 _05000 H281DRAFT_05001: H281DRAFT_05001 - type III secretion protein L, at 187,273 to 188,052 _05001 H281DRAFT_05002: H281DRAFT_05002 - type III secretion protein (HrpB4), at 188,037 to 188,852 _05002 H281DRAFT_05003: H281DRAFT_05003 - type III secretion apparatus lipoprotein, YscJ/HrcJ family, at 188,849 to 189,670 _05003 H281DRAFT_05004: H281DRAFT_05004 - type III secretion inner rod protein HrpB2, at 189,667 to 190,059 _05004
Group Condition H281DRAFT_05000 H281DRAFT_05001 H281DRAFT_05002 H281DRAFT_05003 H281DRAFT_05004
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -3.7 N.D. +0.2 -0.5 N.D.
phage Bu1_100 -1.5 N.D. -0.6 -0.4 N.D.
phage Bu1_10 -1.2 N.D. -1.0 +0.4 N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.6 N.D. -1.0 -0.1 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.5 N.D. -0.2 -1.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.5 N.D. -0.6 -0.4 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.0 N.D. -0.2 -1.1 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.6 N.D. -0.4 -0.8 N.D.
ecofab LB in EcoFAB_3.5mL +0.4 N.D. -0.2 -0.6 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.8 N.D. +0.3 -1.6 N.D.
carbon source 4-Hydroxybenzoic Acid (C) +1.1 N.D. -1.2 -0.2 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.4 N.D. +0.4 -1.0 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.7 N.D. -0.1 +0.6 N.D.
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.5 N.D. -0.2 +0.5 N.D.
carbon source L-Glutamic (C) +0.4 N.D. +0.2 -0.7 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.6 N.D. -0.2 -0.5 N.D.
carbon source D-Glucose 20 mM (C) -0.3 N.D. -0.3 +0.6 N.D.
carbon source propionate (C) +0.3 N.D. -0.5 +0.4 N.D.
carbon source butyrate (C) +0.8 N.D. -0.5 -0.0 N.D.
phage Bu1_100 +0.1 N.D. -0.6 +0.8 N.D.
carbon source D-Glucose (C) +0.3 N.D. -0.6 +0.6 N.D.
carbon source propionate (C) -0.5 N.D. -0.2 +1.2 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +1.2 N.D. -0.4 -0.3 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.0 N.D. -0.3 +0.9 N.D.
carbon source acetate (C) +0.8 N.D. -0.4 +0.4 N.D.
carbon source succinate (C) +1.0 N.D. -0.6 +0.7 N.D.
carbon source Protocatechuic Acid (C) +0.3 N.D. -0.1 +0.9 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.8 N.D. +0.1 +0.4 N.D.
carbon source 3-hydroxybutyric (C) +0.7 N.D. +0.2 +0.4 N.D.
carbon source Hexanoic (C) +1.1 N.D. +0.4 +0.5 N.D.
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