Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04994 and H281DRAFT_04995 are separated by 166 nucleotidesH281DRAFT_04995 and H281DRAFT_04996 are separated by 107 nucleotidesH281DRAFT_04996 and H281DRAFT_04997 are separated by 52 nucleotidesH281DRAFT_04997 and H281DRAFT_04998 are separated by 214 nucleotides H281DRAFT_04994: H281DRAFT_04994 - Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains), at 179,858 to 180,340 _04994 H281DRAFT_04995: H281DRAFT_04995 - type III secretion protein HrpB1, at 180,507 to 180,938 _04995 H281DRAFT_04996: H281DRAFT_04996 - type III secretion protein C, at 181,046 to 182,830 _04996 H281DRAFT_04997: H281DRAFT_04997 - AraC-type DNA-binding protein, at 182,883 to 184,328 _04997 H281DRAFT_04998: H281DRAFT_04998 - type III secretion protein T, at 184,543 to 185,394 _04998
Group Condition H281DRAFT_04994 H281DRAFT_04995 H281DRAFT_04996 H281DRAFT_04997 H281DRAFT_04998
carbon source butyrate (C) N.D. N.D. -0.5 -1.7 -1.3
phage Bu1_100 N.D. N.D. +0.6 -0.0 -3.3
phage Bu1_10 N.D. N.D. -0.7 +0.2 -2.2
carbon source Valeric (C) N.D. N.D. -0.8 -1.9 +0.4
carbon source Valeric (C) N.D. N.D. -0.7 -0.5 -0.9
carbon source succinate (C) N.D. N.D. -0.7 -1.7 +0.4
phage Bu1_100 N.D. N.D. +0.0 -2.5 +0.5
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. N.D. -0.7 -0.9 -0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. N.D. +0.0 -0.7 -0.9
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. N.D. +0.1 -0.4 -1.2
carbon source D-Glucose (C) N.D. N.D. +0.3 -0.8 -0.9
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. N.D. +0.4 -0.9 -0.3
carbon source adipate (C) N.D. N.D. -0.5 +0.7 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.3 -0.9 +0.8
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. N.D. +0.7 -0.6 -0.2
carbon source D-Glucose (C) N.D. N.D. +0.5 +0.3 -0.9
carbon source D-Glucose 20 mM (C) N.D. N.D. -0.3 +0.8 -0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. N.D. +0.2 +1.2 -1.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.9 -0.8 +0.1
carbon source Gallic Acid (C) N.D. N.D. +0.4 -0.7 +0.7
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. -0.8 +1.2 +0.3
carbon source 2'-Deoxyinosine 10 mM (C) N.D. N.D. +0.5 +0.9 -0.4
carbon source 2-Deoxy-D-Ribose (C) N.D. N.D. +1.2 +0.5 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. +1.6 -0.8 +0.8
carbon source 2-Deoxy-D-Ribose (C) N.D. N.D. +0.9 +0.4 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. +1.0 -0.3 +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. -0.4 +0.3 +1.9
ecofab LB in EcoFAB_3.5mL N.D. N.D. +0.9 +0.8 +0.2
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. N.D. +0.0 +1.5 +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.0 +0.7 +2.0
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