Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04894 and H281DRAFT_04895 are separated by 71 nucleotidesH281DRAFT_04895 and H281DRAFT_04896 are separated by 102 nucleotidesH281DRAFT_04896 and H281DRAFT_04897 are separated by 711 nucleotidesH281DRAFT_04897 and H281DRAFT_04898 overlap by 1 nucleotides H281DRAFT_04894: H281DRAFT_04894 - inner membrane transporter RhtA, at 44,476 to 45,366 _04894 H281DRAFT_04895: H281DRAFT_04895 - dTDP-4-dehydrorhamnose 3,5-epimerase, at 45,438 to 45,989 _04895 H281DRAFT_04896: H281DRAFT_04896 - transcriptional regulator, AraC family with amidase-like domain, at 46,092 to 47,087 _04896 H281DRAFT_04897: H281DRAFT_04897 - Predicted Zn-dependent protease or its inactivated homolog, at 47,799 to 49,160 _04897 H281DRAFT_04898: H281DRAFT_04898 - Predicted Zn-dependent protease or its inactivated homolog, at 49,160 to 50,596 _04898
Group Condition H281DRAFT_04894 H281DRAFT_04895 H281DRAFT_04896 H281DRAFT_04897 H281DRAFT_04898
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 N.D. -3.8 +0.3 +0.2
ecofab LB in EcoFAB_3.5mL -0.2 N.D. -2.2 +0.1 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.6 N.D. -1.4 +0.1 -0.4
carbon source D,L-Lactate (C) -0.2 N.D. -2.0 +0.2 +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.2 N.D. -1.4 +0.0 -0.1
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.4 N.D. -1.8 -0.1 +0.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.4 N.D. -1.9 -0.2 +0.3
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.2 N.D. -1.6 +0.0 +0.1
carbon source 2'-Deoxyinosine 10 mM (C) +0.4 N.D. -1.5 +0.1 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 N.D. -1.1 +0.1 +0.2
carbon source D-Glucose (C) -0.1 N.D. -1.5 +0.4 +0.1
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.3 N.D. -1.6 +0.4 -0.1
carbon source Hexanoic (C) +0.0 N.D. -1.3 +0.1 +0.2
carbon source Azelaic (C) -0.2 N.D. +0.6 -0.6 -0.7
carbon source Hydroxy-L-Proline (C) +0.2 N.D. -1.0 -0.2 +0.2
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.3 N.D. -1.0 -0.1 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.4 N.D. -1.2 -0.1 +0.2
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 N.D. -1.2 +0.1 +0.2
carbon source 2-Deoxy-D-Ribose (C) +0.1 N.D. -1.1 +0.3 +0.1
carbon source Hexanoic (C) +1.2 N.D. +0.0 -0.6 -0.6
carbon source adipate (C) -0.8 N.D. +1.1 -0.0 +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.6 N.D. +0.8 +0.4 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.5 N.D. +0.6 +0.6 -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.6 N.D. +0.9 +0.5 -0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.3 N.D. +0.7 +0.5 +0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.4 N.D. +1.7 -0.2 -0.1
carbon source Valeric (C) +0.7 N.D. +0.8 -0.0 -0.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.3 N.D. +0.8 +0.2 +0.3
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.3 N.D. +1.1 +0.2 +0.1
carbon source Sebacic (C) +0.5 N.D. +1.0 -0.0 +0.3
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