Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04889 and H281DRAFT_04890 are separated by 76 nucleotidesH281DRAFT_04890 and H281DRAFT_04891 are separated by 37 nucleotidesH281DRAFT_04891 and H281DRAFT_04892 are separated by 1120 nucleotidesH281DRAFT_04892 and H281DRAFT_04893 are separated by 204 nucleotides H281DRAFT_04889: H281DRAFT_04889 - hypothetical protein, at 34,475 to 35,026 _04889 H281DRAFT_04890: H281DRAFT_04890 - Tetratricopeptide repeat-containing protein, at 35,103 to 38,999 _04890 H281DRAFT_04891: H281DRAFT_04891 - hypothetical protein, at 39,037 to 41,988 _04891 H281DRAFT_04892: H281DRAFT_04892 - Protein of unknown function (DUF1328), at 43,109 to 43,270 _04892 H281DRAFT_04893: H281DRAFT_04893 - transcriptional regulator, LysR family, at 43,475 to 44,398 _04893
Group Condition H281DRAFT_04889 H281DRAFT_04890 H281DRAFT_04891 H281DRAFT_04892 H281DRAFT_04893
carbon source Valeric (C) -4.2 -0.0 +0.2 N.D. -0.2
carbon source Hydroxy-L-Proline (C) -1.7 +0.1 +0.2 N.D. -0.6
carbon source Glycerol (C) -0.8 -0.0 +0.1 N.D. -0.9
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.0 -0.2 +0.1 N.D. -0.1
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.6 +0.2 +0.3 N.D. -1.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) -1.0 +0.1 +0.1 N.D. -0.3
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -1.1 +0.1 +0.2 N.D. -0.3
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.7 +0.2 -0.3 N.D. -0.2
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.6 +0.2 -0.2 N.D. -0.4
ecofab LB in EcoFAB_3.5mL -0.8 +0.1 +0.2 N.D. -0.4
carbon source succinate (C) -1.2 +0.2 +0.3 N.D. -0.1
carbon source 2-Deoxy-D-Ribose 10 mM (C) -1.1 +0.0 +0.2 N.D. +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -1.6 +0.2 +0.2 N.D. +0.5
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.8 +0.3 +0.2 N.D. -0.1
carbon source 2'-Deoxyinosine 5 mM (C) -0.9 +0.1 +0.2 N.D. +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -1.1 +0.2 -0.0 N.D. +0.6
carbon source 2-Deoxy-D-ribonic lithium salt (C) -1.0 +0.1 +0.0 N.D. +0.5
carbon source adipate (C) -0.8 -0.1 -0.1 N.D. +0.6
carbon source Malonic (C) +0.7 +0.1 +0.1 N.D. -0.6
carbon source 2'-Deoxyinosine 10 mM (C) -0.6 +0.5 +0.2 N.D. +0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.7 -0.0 -0.2 N.D. +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 +0.1 +0.2 N.D. -0.1
carbon source Hexanoic (C) +1.3 +0.1 -0.1 N.D. +0.0
carbon source D,L-Lactate (C) +0.7 +0.0 +0.2 N.D. +0.5
carbon source Sebacic (C) +1.0 +0.1 +0.1 N.D. +0.2
carbon source D-Glucose (C) +0.5 +0.1 +0.1 N.D. +0.7
control NoPhageControl +1.2 +0.1 -0.1 N.D. +0.5
carbon source D-Glucose (C) +0.9 +0.2 +0.1 N.D. +0.5
carbon source 4-Hydroxybenzoic Acid (C) +0.8 -0.2 +0.2 N.D. +1.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.0 +0.1 +0.2 N.D. +1.3
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