Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04845 and H281DRAFT_04846 are separated by 301 nucleotidesH281DRAFT_04846 and H281DRAFT_04847 are separated by 139 nucleotidesH281DRAFT_04847 and H281DRAFT_04848 are separated by 445 nucleotidesH281DRAFT_04848 and H281DRAFT_04849 overlap by 4 nucleotides H281DRAFT_04845: H281DRAFT_04845 - dolichol-phosphate mannosyltransferase, at 286,691 to 287,821 _04845 H281DRAFT_04846: H281DRAFT_04846 - Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose), at 288,123 to 288,578 _04846 H281DRAFT_04847: H281DRAFT_04847 - mannose-1-phosphate guanylyltransferase (GDP) (EC 2.7.7.22)/mannose-6-phosphate isomerase, type 2 (EC 5.3.1.8), at 288,718 to 290,151 _04847 H281DRAFT_04848: H281DRAFT_04848 - hypothetical protein, at 290,597 to 291,442 _04848 H281DRAFT_04849: H281DRAFT_04849 - UDP-glucose 4-epimerase, at 291,439 to 292,395 _04849
Group Condition H281DRAFT_04845 H281DRAFT_04846 H281DRAFT_04847 H281DRAFT_04848 H281DRAFT_04849
carbon source Dodecandioic (C) -0.0 -1.1 +0.1 -4.7 -4.9
carbon source Hexanoic (C) -0.5 -1.1 +0.1 -4.5 -4.7
carbon source acetate (C) -0.2 -0.5 +0.1 -2.8 -5.1
carbon source Valeric (C) -0.3 -0.6 +0.2 -4.8 -2.4
carbon source Malonic (C) +0.0 -0.4 +0.3 -1.7 -5.1
carbon source Hexanoic (C) -0.8 -1.1 +0.0 -4.2 -0.4
carbon source propionate (C) -0.4 -0.4 +0.2 -0.8 -5.0
carbon source Valeric (C) -0.6 -1.8 +0.1 -3.1 -0.5
carbon source butyrate (C) -0.2 +0.0 +0.0 -4.5 -1.2
carbon source propionate (C) -0.3 -0.7 +0.3 -1.5 -3.5
carbon source Azelaic (C) +0.1 -1.6 +0.1 -1.6 -2.6
carbon source propionate (C) +0.1 -0.6 +0.1 -2.5 -2.3
carbon source Pimelic (C) -0.2 -0.6 +0.2 -3.9 -0.4
carbon source D-Glucose 20 mM (C) -0.6 +0.3 -0.2 -2.3 -1.8
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.6 -0.2 -0.0 -1.6 -1.9
control NoPhageControl -0.2 -0.8 +0.1 -1.4 -1.9
carbon source Suberic (C) -0.3 -0.5 +0.3 -1.4 -1.8
carbon source Malonic (C) +0.4 +0.2 +0.2 -2.1 -1.3
carbon source adipate (C) -0.2 -0.1 +0.3 -3.0 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.4 +0.2 -3.5 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +1.1 +0.1 -3.0 +0.6
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.0 +1.3 -0.1 +1.7 +2.0
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +1.1 +1.1 +1.0 +1.6 +0.4
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +1.3 +0.5 +0.6 +2.1 +1.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.8 +1.2 +0.3 +2.1 +2.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.6 +1.9 +0.2 +2.2 +2.3
carbon source 4-Hydroxybenzoic Acid (C) +0.7 +0.6 +0.2 +3.1 +2.7
phage Bu1_100 +3.8 +7.4 +0.7 +8.0 +8.1
phage Bu1_100 +3.9 +8.5 +0.8 +7.4 +8.1
phage Bu1_10 +3.8 +8.4 +0.9 +7.7 +8.4
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