Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04838 and H281DRAFT_04839 are separated by 2029 nucleotidesH281DRAFT_04839 and H281DRAFT_04840 are separated by 669 nucleotidesH281DRAFT_04840 and H281DRAFT_04841 are separated by 820 nucleotidesH281DRAFT_04841 and H281DRAFT_04842 overlap by 4 nucleotides H281DRAFT_04838: H281DRAFT_04838 - 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family, at 273,557 to 275,284 _04838 H281DRAFT_04839: H281DRAFT_04839 - hypothetical protein, at 277,314 to 277,694 _04839 H281DRAFT_04840: H281DRAFT_04840 - Uncharacterized protein conserved in bacteria, at 278,364 to 279,188 _04840 H281DRAFT_04841: H281DRAFT_04841 - Glycosyltransferase involved in cell wall bisynthesis, at 280,009 to 280,956 _04841 H281DRAFT_04842: H281DRAFT_04842 - hypothetical protein, at 280,953 to 283,577 _04842
Group Condition H281DRAFT_04838 H281DRAFT_04839 H281DRAFT_04840 H281DRAFT_04841 H281DRAFT_04842
phage Bu1_100 -1.0 +0.1 -0.6 +0.7 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.3 +0.1 -0.7 +0.3 -0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.3 +0.2 -0.5 +0.1 -0.4
phage Bu1_10 -0.8 +0.1 -0.8 +0.9 +0.4
phage Bu1_100 -1.1 +0.3 -0.5 +1.0 +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.4 +0.1 -0.4 +0.1 +0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +1.0 -0.1 -0.5 +0.1 -0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +1.2 -0.1 -0.2 -0.1 -0.0
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.2 -0.1 +0.5 +0.1 +0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.7 +0.1 -0.4 +0.0 +0.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.5 -0.0 +0.2 +0.2 +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.5 +0.1 +0.4 -0.1 -0.0
carbon source 2-Deoxy-D-Ribose (C) +0.3 -0.0 +0.4 +0.2 +0.1
carbon source 2-Deoxy-D-Ribose (C) +0.1 +0.2 +0.5 +0.2 +0.1
carbon source Protocatechuic Acid (C) +0.2 +0.2 +0.2 +0.1 +0.2
carbon source propionate (C) +0.2 +0.1 +0.5 +0.2 -0.0
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.4 -0.1 +0.6 +0.1 +0.0
carbon source Hexanoic (C) +0.3 -0.0 +0.5 +0.1 +0.2
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.3 +0.1 +0.6 +0.1 +0.1
carbon source 2-Deoxy-D-Ribose (C) +0.3 +0.2 +0.4 +0.1 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 +0.2 +0.1 +0.3 +0.4
carbon source Protocatechuic Acid (C) +0.1 +0.2 +0.4 +0.2 +0.2
carbon source Phenylacetic (C) +0.1 +0.2 +0.3 +0.2 +0.3
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.1 +0.2 +0.2 +0.2
carbon source Malonic (C) +0.3 +0.5 +0.4 +0.0 -0.0
carbon source succinate (C) +0.4 +0.1 +0.5 -0.0 +0.2
carbon source Phenylacetic (C) +0.3 +0.2 +0.4 +0.1 +0.3
carbon source D-Glucose (C) +0.3 +0.1 +0.2 +0.4 +0.2
carbon source Hexanoic (C) +0.2 +0.2 +0.7 +0.1 +0.1
carbon source succinate (C) +0.4 +0.3 +0.5 +0.0 +0.2
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