Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04736 and H281DRAFT_04737 are separated by 177 nucleotidesH281DRAFT_04737 and H281DRAFT_04738 are separated by 94 nucleotidesH281DRAFT_04738 and H281DRAFT_04739 are separated by 102 nucleotidesH281DRAFT_04739 and H281DRAFT_04740 are separated by 322 nucleotides H281DRAFT_04736: H281DRAFT_04736 - Alkyl hydroperoxide reductase subunit AhpC (peroxiredoxin), at 143,891 to 144,529 _04736 H281DRAFT_04737: H281DRAFT_04737 - glutaryl-CoA dehydrogenase, at 144,707 to 145,897 _04737 H281DRAFT_04738: H281DRAFT_04738 - transcriptional regulator, IclR family, at 145,992 to 146,777 _04738 H281DRAFT_04739: H281DRAFT_04739 - EAL domain, c-di-GMP-specific phosphodiesterase class I (or its enzymatically inactive variant), at 146,880 to 147,713 _04739 H281DRAFT_04740: H281DRAFT_04740 - MFS transporter, AAHS family, 4-hydroxybenzoate transporter, at 148,036 to 149,400 _04740
Group Condition H281DRAFT_04736 H281DRAFT_04737 H281DRAFT_04738 H281DRAFT_04739 H281DRAFT_04740
carbon source Azelaic (C) +0.0 -4.3 +0.1 +0.4 +0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.3 -0.2 -0.3 -0.5 -0.2
carbon source Pimelic (C) +0.3 -1.5 +0.0 -0.6 +0.2
carbon source Suberic (C) +0.1 -1.8 -0.0 +0.1 +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM +0.2 -0.3 -0.3 -0.3 -0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.8 -0.3 +0.0 +0.2 +0.0
carbon source D-Glucose (C) +0.2 +0.1 -0.2 -0.6 -0.1
carbon source 4-Methyl-2-oxopentanoic (C) -0.2 -0.2 +0.1 -0.3 +0.3
phage Bu1_100 +0.4 -0.0 -0.4 -0.4 +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.4 -0.5 +0.1 -0.3 +0.1
carbon source Hydroxy-L-Proline (C) -0.1 +0.0 +0.2 -0.8 +0.5
carbon source acetate (C) +0.2 +0.1 -0.4 +0.2 -0.1
carbon source Phenylacetic (C) +0.4 -0.5 +0.1 +0.1 +0.0
carbon source Dodecandioic (C) -0.2 -0.2 -0.2 +0.6 -0.1
carbon source 4-Hydroxybenzoic Acid (C) +0.7 -0.1 -0.1 +0.3 -0.6
carbon source 2'-Deoxyinosine 5 mM (C) +0.4 +0.0 +0.1 -0.4 +0.2
carbon source adipate (C) -0.4 +1.0 -0.4 -0.1 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.4 +0.3 -0.0 -0.1 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.2 -0.2 -0.1 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.1 -0.5 +0.2 +0.6
carbon source butyrate (C) +0.7 -0.0 -0.2 +0.2 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.5 +0.3 +0.1 +0.2 -0.3
carbon source Valeric (C) +0.3 +0.1 +0.1 +0.6 -0.4
carbon source 2'-Deoxyinosine 10 mM (C) +0.3 -0.1 +0.4 +0.2 +0.3
carbon source Hexanoic (C) +0.2 +0.4 +0.2 +0.6 -0.3
carbon source Hexanoic (C) +0.2 +0.5 -0.3 +0.9 -0.0
carbon source Protocatechuic Acid (C) +0.4 +0.3 +0.0 +0.3 +0.3
carbon source adipate (C) +0.0 +1.4 -0.6 +0.4 +0.0
carbon source Valeric (C) +0.4 +0.2 +0.2 +0.4 +0.2
carbon source Malonic (C) +0.3 +0.5 +0.4 -0.1 +0.3
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