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Fitness for 5 genes in
Paraburkholderia bryophila 376MFSha3.1
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Top 30 experiments (either direction), sorted by average fitness
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500 nt
H281DRAFT_04710 and H281DRAFT_04711 are separated by 144 nucleotides
H281DRAFT_04711 and H281DRAFT_04712 are separated by 22 nucleotides
H281DRAFT_04712 and H281DRAFT_04713 are separated by 192 nucleotides
H281DRAFT_04713 and H281DRAFT_04714 are separated by 108 nucleotides
H281DRAFT_04710: H281DRAFT_04710 - phosphoribosylformylglycinamidine cyclo-ligase, at 123,050 to 124,117
_04710
H281DRAFT_04711: H281DRAFT_04711 - tRNA dimethylallyltransferase, at 124,262 to 125,242
_04711
H281DRAFT_04712: H281DRAFT_04712 - DNA mismatch repair protein MutL, at 125,265 to 127,310
_04712
H281DRAFT_04713: H281DRAFT_04713 - membrane-associated protein, at 127,503 to 128,168
_04713
H281DRAFT_04714: H281DRAFT_04714 - small conductance mechanosensitive channel, at 128,277 to 129,089
_04714
Group
Condition
H281DRAFT
_04710
H281DRAFT
_04711
H281DRAFT
_04712
H281DRAFT
_04713
H281DRAFT
_04714
carbon source
adipate (C)
-6.9
N.D.
-0.2
-0.6
+0.4
carbon source
L-Glutamic (C)
-5.3
N.D.
-0.1
-0.6
-0.5
carbon source
2-Deoxy-D-Ribose (C)
-6.6
N.D.
-0.1
-0.2
+0.5
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
-5.6
N.D.
-0.1
+0.3
-0.9
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
-5.5
N.D.
-0.2
+0.0
-0.5
carbon source
2-Deoxy-D-Ribose (C)
-6.0
N.D.
-0.1
-0.2
+0.0
carbon source
D-Glucose (C)
-6.3
N.D.
+0.1
+0.3
-0.2
carbon source
2-furoic (C)
-6.2
N.D.
-0.1
+0.1
+0.0
carbon source
2-Deoxy-D-Ribose (C)
-6.0
N.D.
-0.2
+0.1
+0.0
supernatant
RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
-5.6
N.D.
-0.4
+0.6
-0.5
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM
-5.7
N.D.
-0.2
+0.2
-0.2
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
-5.5
N.D.
-0.2
+0.5
-0.6
carbon source
Protocatechuic Acid (C)
-6.3
N.D.
-0.0
+0.2
+0.3
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM
-5.7
N.D.
-0.1
+0.4
-0.2
carbon source
2-Deoxy-D-ribonic lithium salt (C)
-5.4
N.D.
-0.2
-0.3
+0.3
supernatant
RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x
-5.5
N.D.
-0.3
+0.7
-0.5
carbon source
L-Glutamic (C)
-4.5
N.D.
-0.2
-1.0
+0.2
carbon source
Gallic Acid (C)
-5.0
N.D.
+0.1
-0.0
-0.4
carbon source
propionate (C)
-4.9
N.D.
+0.1
-0.5
+0.0
carbon source
Glycerol (C)
-5.3
N.D.
+0.1
+0.1
+0.0
carbon source
butyrate (C)
-4.6
N.D.
+0.1
-0.9
+0.4
carbon source
2-furoic (C)
-5.1
N.D.
-0.2
+0.2
+0.2
carbon source
Dodecandioic (C)
-4.6
N.D.
-0.1
-0.7
+0.6
carbon source
p-Coumaric (C)
-4.9
N.D.
+0.0
+0.4
-0.3
carbon source
4-Hydroxybenzoic Acid (C)
-7.1
N.D.
-0.1
+3.2
-0.4
supernatant
Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM
-5.0
N.D.
-0.2
+1.0
-0.2
carbon source
2-Deoxyadenosine 5-monophosphate 5 mM (C)
-4.4
N.D.
-0.1
+0.9
+0.1
carbon source
Azelaic (C)
-4.4
N.D.
+0.3
-0.1
+0.9
carbon source
Phenylacetic (C)
-4.5
N.D.
+0.0
+1.7
-0.4
carbon source
Phenylacetic (C)
-5.0
N.D.
-0.1
+2.0
+0.4
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