Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04664 and H281DRAFT_04665 are separated by 63 nucleotidesH281DRAFT_04665 and H281DRAFT_04666 are separated by 320 nucleotidesH281DRAFT_04666 and H281DRAFT_04667 are separated by 137 nucleotidesH281DRAFT_04667 and H281DRAFT_04668 are separated by 18 nucleotides H281DRAFT_04664: H281DRAFT_04664 - Polyisoprenoid-binding protein YceI, at 65,916 to 66,479 _04664 H281DRAFT_04665: H281DRAFT_04665 - Polyisoprenoid-binding protein YceI, at 66,543 to 67,115 _04665 H281DRAFT_04666: H281DRAFT_04666 - MFS transporter, MHS family, proline/betaine transporter, at 67,436 to 68,713 _04666 H281DRAFT_04667: H281DRAFT_04667 - protein translocase subunit secF, at 68,851 to 69,801 _04667 H281DRAFT_04668: H281DRAFT_04668 - preprotein translocase subunit SecD, at 69,820 to 71,880 _04668
Group Condition H281DRAFT_04664 H281DRAFT_04665 H281DRAFT_04666 H281DRAFT_04667 H281DRAFT_04668
carbon source adipate (C) +0.0 -1.2 +0.1 N.D. N.D.
carbon source 2-furoic (C) -0.3 -0.1 -0.3 N.D. N.D.
carbon source Gallic Acid (C) -0.2 -0.4 -0.1 N.D. N.D.
carbon source butyrate (C) -0.4 -0.4 +0.3 N.D. N.D.
carbon source butyrate (C) +0.1 -0.7 +0.2 N.D. N.D.
carbon source D-Glucose (C) -0.4 -0.1 +0.2 N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.3 +0.1 -0.4 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.3 +0.2 N.D. N.D.
carbon source Phenylacetic (C) +0.3 +0.5 -0.6 N.D. N.D.
carbon source 2-Deoxy-D-Ribose (C) -0.2 -0.1 +0.4 N.D. N.D.
phage Bu1_100 +0.6 +0.3 -0.6 N.D. N.D.
carbon source Protocatechuic Acid (C) +0.4 -0.3 +0.2 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 +0.3 +0.2 N.D. N.D.
carbon source succinate (C) +0.2 -0.2 +0.2 N.D. N.D.
carbon source p-Coumaric (C) +0.3 +0.4 -0.2 N.D. N.D.
carbon source 3-Hydroxypropionate (C) +0.3 +0.4 -0.2 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.4 +0.5 +0.4 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.2 +0.2 +0.2 N.D. N.D.
carbon source propionate (C) +0.2 +0.2 +0.2 N.D. N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.2 +0.2 +0.2 N.D. N.D.
carbon source Dodecandioic (C) +0.1 +0.2 +0.3 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.6 +0.1 N.D. N.D.
carbon source Hexanoic (C) +0.0 +0.2 +0.6 N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.2 +0.2 +0.4 N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.4 +0.1 +0.3 N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.1 +0.5 +0.2 N.D. N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.3 +0.2 +0.3 N.D. N.D.
phage Bu1_100 +0.4 +0.2 +0.2 N.D. N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.2 +0.5 +0.2 N.D. N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +0.7 +0.2 N.D. N.D.
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