Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04657 and H281DRAFT_04658 are separated by 334 nucleotidesH281DRAFT_04658 and H281DRAFT_04659 are separated by 382 nucleotidesH281DRAFT_04659 and H281DRAFT_04660 overlap by 4 nucleotidesH281DRAFT_04660 and H281DRAFT_04661 overlap by 8 nucleotides H281DRAFT_04657: H281DRAFT_04657 - hypothetical protein, at 58,714 to 59,097 _04657 H281DRAFT_04658: H281DRAFT_04658 - putative N6-adenine-specific DNA methylase, at 59,432 to 60,721 _04658 H281DRAFT_04659: H281DRAFT_04659 - hypothetical protein, at 61,104 to 61,886 _04659 H281DRAFT_04660: H281DRAFT_04660 - paraquat-inducible protein B, at 61,883 to 63,541 _04660 H281DRAFT_04661: H281DRAFT_04661 - paraquat-inducible protein A, at 63,534 to 64,043 _04661
Group Condition H281DRAFT_04657 H281DRAFT_04658 H281DRAFT_04659 H281DRAFT_04660 H281DRAFT_04661
carbon source Hexanoic (C) -0.4 -0.5 +0.2 +0.1 -1.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 -0.4 -0.2 -0.4 -0.9
carbon source Malonic (C) -0.7 -0.4 +0.1 +0.1 -0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.4 -0.8 +0.3 -0.2 -1.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.2 +0.4 -0.3 +0.1 -1.1
carbon source butyrate (C) +0.0 -0.4 +0.1 -0.1 -0.8
carbon source Hexanoic (C) +0.1 -0.4 +0.1 +0.2 -0.9
carbon source Protocatechuic Acid (C) +0.0 +0.5 -0.0 +0.0 -1.4
carbon source Sebacic (C) -0.4 +0.1 +0.1 +0.3 -0.9
carbon source 2'-Deoxyinosine 10 mM (C) +0.5 -0.2 +0.1 +0.0 -1.1
carbon source D-Glucose 20 mM (C) +0.2 -0.4 +0.2 +0.0 -0.7
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.4 -0.2 +0.1 -0.2 -0.7
carbon source Valeric (C) -0.7 -0.2 +0.3 +0.2 -0.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.2 -0.5 +0.3 -0.1 -0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.2 -0.7 -0.0 -0.0 +0.5
carbon source propionate (C) +0.4 -0.1 +0.0 +0.2 -0.9
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.5 -0.6 +0.1 -0.2 -0.1
carbon source Protocatechuic Acid (C) +0.3 -0.1 +0.2 +0.3 -0.8
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.6 -0.0 +0.1 -0.2 -0.6
carbon source adipate (C) -0.5 -0.0 +0.4 -0.2 +0.4
phage Bu1_100 -0.7 +0.0 -0.1 +0.2 +0.7
carbon source adipate (C) -0.6 +0.0 +0.2 +0.1 +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.5 +0.1 +0.4 -0.2 +0.4
carbon source 2'-Deoxyinosine 10 mM (C) +0.6 -0.3 +0.3 +0.2 -0.3
carbon source butyrate (C) +0.3 +0.4 +0.3 +0.6 -0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.0 -0.2 +0.9 +0.5 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.5 +0.1 +0.3 +0.6
phage Bu1_100 -0.2 +1.0 +0.1 +0.4 +0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.9 +0.4 +0.2 +0.2 +0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.1 -0.3 +0.9 +0.5 +1.3
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