Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04632 and H281DRAFT_04633 are separated by 102 nucleotidesH281DRAFT_04633 and H281DRAFT_04634 are separated by 309 nucleotidesH281DRAFT_04634 and H281DRAFT_04635 are separated by 60 nucleotidesH281DRAFT_04635 and H281DRAFT_04636 are separated by 9 nucleotides H281DRAFT_04632: H281DRAFT_04632 - LysR family transcriptional regulator, glycine cleavage system transcriptional activator, at 30,527 to 31,447 _04632 H281DRAFT_04633: H281DRAFT_04633 - (3S)-malyl-CoA thioesterase, at 31,550 to 31,945 _04633 H281DRAFT_04634: H281DRAFT_04634 - ATP-binding cassette, subfamily B, at 32,255 to 34,144 _04634 H281DRAFT_04635: H281DRAFT_04635 - Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon), at 34,205 to 34,912 _04635 H281DRAFT_04636: H281DRAFT_04636 - hypothetical protein, at 34,922 to 36,034 _04636
Group Condition H281DRAFT_04632 H281DRAFT_04633 H281DRAFT_04634 H281DRAFT_04635 H281DRAFT_04636
carbon source butyrate (C) +0.0 -0.1 -0.3 -4.7 -0.1
carbon source Valeric (C) +0.3 +0.2 -0.3 -4.8 -0.1
phage Bu1_100 -0.0 +0.1 -0.2 -3.5 -0.8
carbon source Phenylacetic (C) -0.2 +0.3 -0.0 -3.9 -0.4
carbon source 4-Hydroxybenzoic Acid (C) -0.0 -1.6 +0.1 -2.4 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.0 -0.0 -3.8 -0.0
phage Bu1_10 -0.2 +0.2 -0.1 -3.4 -0.5
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.3 +0.2 -0.1 -4.2 +0.0
carbon source Pimelic (C) -0.2 -0.1 -0.2 -1.9 -1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.1 -0.0 -3.1 -0.3
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.3 -0.1 +0.1 -2.9 -0.1
carbon source 3-Hydroxypropionate (C) +0.1 -0.2 -0.1 -2.9 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 -0.2 +0.0 -2.6 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.1 +0.0 -3.0 +0.0
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.2 -0.0 +0.2 -2.9 -0.1
carbon source propionate (C) +0.3 -0.2 +0.0 -2.2 -0.9
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM -0.2 +0.0 -0.0 -2.6 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.1 +0.0 -2.7 -0.1
carbon source 2-Deoxy-D-Ribose (C) -0.0 -0.1 -0.2 -2.3 +0.0
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 +0.0 +0.2 -2.7 +0.1
carbon source propionate (C) +0.3 -0.1 -0.0 -2.1 -0.6
carbon source 2-Deoxy-D-Ribose (C) +0.2 +0.1 -0.1 -2.7 +0.1
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.1 -0.0 -0.0 -2.4 -0.1
carbon source 2'-Deoxyinosine 10 mM (C) +0.2 -0.1 +0.4 -2.8 +0.0
carbon source Phenylacetic (C) +0.2 +0.1 -0.0 -2.4 -0.1
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) -0.2 +0.1 +0.2 -2.2 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 +0.4 -0.1 -2.4 -0.2
carbon source adipate (C) +0.4 +0.2 -0.7 -1.3 -0.6
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.5 -0.4 +0.1 +2.3 -0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.3 -0.2 -0.0 +3.0 -0.3
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