Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04521 and H281DRAFT_04522 are separated by 340 nucleotidesH281DRAFT_04522 and H281DRAFT_04523 are separated by 466 nucleotidesH281DRAFT_04523 and H281DRAFT_04524 are separated by 183 nucleotidesH281DRAFT_04524 and H281DRAFT_04525 are separated by 98 nucleotides H281DRAFT_04521: H281DRAFT_04521 - phosphoribosylamine--glycine ligase, at 252,427 to 253,725 _04521 H281DRAFT_04522: H281DRAFT_04522 - DNA-binding regulatory protein, YebC/PmpR family, at 254,066 to 254,794 _04522 H281DRAFT_04523: H281DRAFT_04523 - uracil phosphoribosyltransferase, at 255,261 to 255,977 _04523 H281DRAFT_04524: H281DRAFT_04524 - 3-oxoacyl-[acyl-carrier protein] reductase, at 256,161 to 256,940 _04524 H281DRAFT_04525: H281DRAFT_04525 - methylglyoxal synthase, at 257,039 to 257,428 _04525
Group Condition H281DRAFT_04521 H281DRAFT_04522 H281DRAFT_04523 H281DRAFT_04524 H281DRAFT_04525
carbon source Hexanoic (C) N.D. N.D. -0.8 N.D. N.D.
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. N.D. -0.5 N.D. N.D.
carbon source Glycerol (C) N.D. N.D. -0.5 N.D. N.D.
phage Bu1_100 N.D. N.D. -0.4 N.D. N.D.
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. +0.3 N.D. N.D.
carbon source L-Glutamic (C) N.D. N.D. +0.3 N.D. N.D.
carbon source Protocatechuic Acid (C) N.D. N.D. +0.3 N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. N.D. +0.3 N.D. N.D.
carbon source D,L-Lactate (C) N.D. N.D. +0.4 N.D. N.D.
carbon source 2-furoic (C) N.D. N.D. +0.4 N.D. N.D.
carbon source succinate (C) N.D. N.D. +0.4 N.D. N.D.
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. N.D. +0.4 N.D. N.D.
carbon source 2-Deoxy-D-Ribose (C) N.D. N.D. +0.4 N.D. N.D.
carbon source adipate (C) N.D. N.D. +0.4 N.D. N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. N.D. +0.4 N.D. N.D.
phage Bu1_10 N.D. N.D. +0.4 N.D. N.D.
carbon source Phenylacetic (C) N.D. N.D. +0.5 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. N.D. +0.5 N.D. N.D.
carbon source Malonic (C) N.D. N.D. +0.5 N.D. N.D.
carbon source 3-hydroxybutyric (C) N.D. N.D. +0.5 N.D. N.D.
carbon source Valeric (C) N.D. N.D. +0.5 N.D. N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. +0.5 N.D. N.D.
carbon source D,L-Lactate (C) N.D. N.D. +0.5 N.D. N.D.
carbon source Protocatechuic Acid (C) N.D. N.D. +0.6 N.D. N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. N.D. +0.6 N.D. N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM N.D. N.D. +0.6 N.D. N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. +0.6 N.D. N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. +0.7 N.D. N.D.
phage Bu1_100 N.D. N.D. +0.7 N.D. N.D.
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. +1.0 N.D. N.D.
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