Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04475 and H281DRAFT_04476 are separated by 11 nucleotidesH281DRAFT_04476 and H281DRAFT_04477 are separated by 155 nucleotidesH281DRAFT_04477 and H281DRAFT_04478 are separated by 224 nucleotidesH281DRAFT_04478 and H281DRAFT_04479 are separated by 80 nucleotides H281DRAFT_04475: H281DRAFT_04475 - Uncharacterized membrane protein YccC, at 204,823 to 207,033 _04475 H281DRAFT_04476: H281DRAFT_04476 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 207,045 to 208,709 _04476 H281DRAFT_04477: H281DRAFT_04477 - transcriptional regulator, LysR family, at 208,865 to 209,803 _04477 H281DRAFT_04478: H281DRAFT_04478 - hypothetical protein, at 210,028 to 210,186 _04478 H281DRAFT_04479: H281DRAFT_04479 - DNA repair exonuclease, at 210,267 to 211,085 _04479
Group Condition H281DRAFT_04475 H281DRAFT_04476 H281DRAFT_04477 H281DRAFT_04478 H281DRAFT_04479
carbon source 4-Hydroxybenzoic Acid (C) -1.8 -2.4 -4.5 N.D. -0.1
carbon source p-Coumaric (C) -1.1 -0.8 -0.7 N.D. +0.0
carbon source p-Coumaric (C) -1.0 -0.8 -0.6 N.D. +0.1
carbon source Valeric (C) +0.2 +0.3 -1.7 N.D. -0.1
carbon source propionate (C) +0.0 +0.3 -1.2 N.D. -0.1
carbon source propionate (C) +0.1 +0.4 -1.4 N.D. +0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.1 -0.6 +0.2 N.D. -0.1
carbon source Valeric (C) +0.2 +0.3 -0.9 N.D. -0.2
carbon source butyrate (C) +0.6 +0.4 -1.2 N.D. -0.2
carbon source Phenylacetic (C) +0.8 +0.5 -1.5 N.D. -0.1
carbon source propionate (C) +0.1 +0.4 -0.3 N.D. -0.1
carbon source Phenylacetic (C) +0.8 +0.8 -1.6 N.D. +0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM +0.2 -0.1 +0.3 N.D. -0.3
carbon source adipate (C) +0.1 +0.3 +0.1 N.D. -0.4
carbon source Dodecandioic (C) +0.4 +0.3 -0.3 N.D. -0.1
carbon source butyrate (C) +0.5 +0.7 -0.8 N.D. +0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.4 +0.1 +0.2 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.5 +0.3 -0.1 N.D. +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.3 +0.1 N.D. +0.0
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.2 +0.1 +0.1 N.D. +0.4
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.1 +0.3 +0.2 N.D. +0.3
carbon source Hexanoic (C) +0.2 -0.2 +1.1 N.D. -0.2
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.2 +0.2 +0.0 N.D. +0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.3 +0.3 +0.2 N.D. +0.2
carbon source 2'-Deoxyinosine 5 mM (C) +0.2 +0.1 +0.3 N.D. +0.4
carbon source 2-furoic (C) +0.4 +0.3 +0.1 N.D. +0.2
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.2 +0.0 +0.3 N.D. +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.7 +0.4 -0.2 N.D. +0.5
carbon source Hexanoic (C) -0.0 +0.2 +1.2 N.D. +0.1
carbon source 2-furoic (C) +0.7 +0.8 +0.7 N.D. -0.1
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