Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04444 and H281DRAFT_04445 are separated by 345 nucleotidesH281DRAFT_04445 and H281DRAFT_04446 are separated by 235 nucleotidesH281DRAFT_04446 and H281DRAFT_04447 are separated by 221 nucleotidesH281DRAFT_04447 and H281DRAFT_04448 are separated by 480 nucleotides H281DRAFT_04444: H281DRAFT_04444 - Crotonobetainyl-CoA:carnitine CoA-transferase CaiB, at 161,891 to 163,111 _04444 H281DRAFT_04445: H281DRAFT_04445 - alanyl-tRNA synthetase, at 163,457 to 166,081 _04445 H281DRAFT_04446: H281DRAFT_04446 - transcriptional regulator, LysR family, at 166,317 to 167,276 _04446 H281DRAFT_04447: H281DRAFT_04447 - Uncharacterised MFS-type transporter YbfB, at 167,498 to 169,060 _04447 H281DRAFT_04448: H281DRAFT_04448 - L-threonine aldolase, at 169,541 to 170,572 _04448
Group Condition H281DRAFT_04444 H281DRAFT_04445 H281DRAFT_04446 H281DRAFT_04447 H281DRAFT_04448
carbon source Protocatechuic Acid (C) -0.6 N.D. -0.2 -0.1 -0.1
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.1 N.D. -0.7 +0.0 -0.3
carbon source 4-Methyl-2-oxopentanoic (C) -0.2 N.D. -0.5 +0.1 -0.5
carbon source Protocatechuic Acid (C) -0.3 N.D. -0.4 -0.1 -0.1
carbon source propionate (C) +0.0 N.D. +0.1 -0.1 -0.9
carbon source adipate (C) -0.4 N.D. -0.4 -0.1 +0.2
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.2 N.D. -0.2 -0.1 -0.5
carbon source Valeric (C) +0.0 N.D. -0.7 -0.1 +0.3
carbon source butyrate (C) -0.2 N.D. +0.4 -0.2 -0.5
carbon source Gallic Acid (C) -0.0 N.D. +0.3 +0.1 -0.7
carbon source Malonic (C) -0.0 N.D. -0.7 +0.1 +0.3
carbon source Hexanoic (C) +0.2 N.D. +0.2 +0.2 -0.9
phage Bu1_100 +0.2 N.D. +0.3 +0.0 -0.5
carbon source Malonic (C) -0.2 N.D. -0.3 +0.3 +0.3
carbon source 2-Deoxy-D-Ribose (C) -0.1 N.D. +0.4 +0.2 -0.2
carbon source 2'-Deoxyinosine 10 mM (C) +0.1 N.D. -0.4 +0.2 +0.4
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.1 N.D. -0.4 +0.0 +0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 N.D. +0.1 -0.1 +0.7
carbon source acetate (C) -0.2 N.D. +0.4 +0.1 +0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.0 N.D. -0.2 -0.0 +1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 N.D. +0.2 -0.2 +0.7
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.0 N.D. +0.2 +0.0 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. +0.3 -0.1 +0.8
carbon source 2'-Deoxyinosine 5 mM (C) +0.1 N.D. +0.1 +0.2 +0.5
phage Bu1_10 -0.2 N.D. +0.1 +0.2 +0.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.2 N.D. +0.1 +0.0 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. +0.4 -0.3 +0.9
carbon source 2'-Deoxyinosine 10 mM (C) +0.2 N.D. +0.6 -0.0 +0.6
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.1 N.D. +0.7 +0.1 +0.5
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.1 N.D. +0.5 +0.2 +0.7
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