Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04397 and H281DRAFT_04398 overlap by 4 nucleotidesH281DRAFT_04398 and H281DRAFT_04399 are separated by 19 nucleotidesH281DRAFT_04399 and H281DRAFT_04400 are separated by 156 nucleotidesH281DRAFT_04400 and H281DRAFT_04401 are separated by 201 nucleotides H281DRAFT_04397: H281DRAFT_04397 - RNase HI, at 112,332 to 112,778 _04397 H281DRAFT_04398: H281DRAFT_04398 - Methylase involved in ubiquinone/menaquinone biosynthesis, at 112,775 to 113,680 _04398 H281DRAFT_04399: H281DRAFT_04399 - hydroxyacylglutathione hydrolase, at 113,700 to 114,491 _04399 H281DRAFT_04400: H281DRAFT_04400 - membrane-bound lytic murein transglycosylase D, at 114,648 to 116,297 _04400 H281DRAFT_04401: H281DRAFT_04401 - Cyanate permease, at 116,499 to 117,737 _04401
Group Condition H281DRAFT_04397 H281DRAFT_04398 H281DRAFT_04399 H281DRAFT_04400 H281DRAFT_04401
ecofab LB in EcoFAB_3.5mL N.D. N.D. -0.5 -0.9 +0.1
carbon source Glycerol (C) N.D. N.D. -1.0 +0.2 -0.1
carbon source 3-Hydroxypropionate (C) N.D. N.D. -0.5 -0.5 +0.2
carbon source p-Coumaric (C) N.D. N.D. -1.4 +0.6 -0.0
carbon source p-Coumaric (C) N.D. N.D. -1.4 +0.6 +0.1
carbon source Glycerol (C) N.D. N.D. -0.9 +0.3 -0.0
carbon source 2-furoic (C) N.D. N.D. -0.7 +0.4 -0.1
carbon source adipate (C) N.D. N.D. +0.4 -0.5 -0.2
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x N.D. N.D. -0.9 +0.7 -0.1
carbon source Malonic (C) N.D. N.D. -0.6 +0.7 -0.2
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. N.D. -0.6 +0.5 +0.1
carbon source 4-Methyl-2-oxopentanoic (C) N.D. N.D. -0.6 +0.4 +0.2
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) N.D. N.D. -0.6 +0.6 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. -0.5 +1.0 -0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. N.D. -0.1 +0.9 -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. N.D. -0.7 +1.2 +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. N.D. -0.5 +0.9 +0.2
carbon source D-Glucose (C) N.D. N.D. +0.5 +0.5 -0.2
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. -0.1 +1.1 +0.0
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) N.D. N.D. -0.5 +1.4 +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) N.D. N.D. -0.3 +1.2 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. N.D. +1.2 +0.2 -0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x N.D. N.D. +0.5 +0.8 -0.0
carbon source 2'-Deoxyinosine 10 mM (C) N.D. N.D. -0.0 +1.2 +0.2
carbon source 2'-Deoxyinosine 5 mM (C) N.D. N.D. +0.3 +1.0 +0.1
carbon source 2'-Deoxyinosine 10 mM (C) N.D. N.D. +0.1 +1.1 +0.2
phage Bu1_100 N.D. N.D. +1.3 +0.3 -0.0
carbon source Phenylacetic (C) N.D. N.D. +0.0 +1.7 +0.0
carbon source Phenylacetic (C) N.D. N.D. +0.0 +1.7 +0.1
carbon source 4-Hydroxybenzoic Acid (C) N.D. N.D. -0.2 +2.4 +0.1
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