Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04360 and H281DRAFT_04361 are separated by 18 nucleotidesH281DRAFT_04361 and H281DRAFT_04362 are separated by 186 nucleotidesH281DRAFT_04362 and H281DRAFT_04363 are separated by 88 nucleotidesH281DRAFT_04363 and H281DRAFT_04364 overlap by 14 nucleotides H281DRAFT_04360: H281DRAFT_04360 - GTP-binding protein LepA, at 76,362 to 78,155 _04360 H281DRAFT_04361: H281DRAFT_04361 - signal peptidase I Serine peptidase. MEROPS family S26A, at 78,174 to 79,067 _04361 H281DRAFT_04362: H281DRAFT_04362 - RNAse III (EC 3.1.26.3), at 79,254 to 80,624 _04362 H281DRAFT_04363: H281DRAFT_04363 - GTP-binding protein Era, at 80,713 to 81,576 _04363 H281DRAFT_04364: H281DRAFT_04364 - DNA replication and repair protein RecO, at 81,563 to 82,480 _04364
Group Condition H281DRAFT_04360 H281DRAFT_04361 H281DRAFT_04362 H281DRAFT_04363 H281DRAFT_04364
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.4 N.D. -1.5 N.D. -0.2
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 N.D. -1.1 N.D. -0.6
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.8 N.D. -1.0 N.D. -0.3
carbon source D-Glucose (C) -0.7 N.D. -1.1 N.D. -0.3
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 N.D. -0.9 N.D. -0.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.5 N.D. -1.0 N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.5 N.D. +0.1 N.D. -0.5
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.4 N.D. -1.2 N.D. -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.1 N.D. -0.3 N.D. -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 N.D. -0.4 N.D. -0.4
carbon source D-Glucose (C) -0.8 N.D. -0.6 N.D. -0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.3 N.D. -0.9 N.D. -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.4 N.D. -0.9 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 N.D. -0.0 N.D. -0.5
control NoPhageControl -1.0 N.D. +0.1 N.D. -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 N.D. +0.3 N.D. -0.5
carbon source Glycerol (C) -0.1 N.D. -0.7 N.D. -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 N.D. -0.4 N.D. -0.2
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.0 N.D. -0.9 N.D. -0.3
carbon source L-Glutamic (C) +0.2 N.D. -1.0 N.D. -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -1.6 N.D. +0.4 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 N.D. +0.1 N.D. -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.0 N.D. +0.0 N.D. -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.7 N.D. +0.2 N.D. -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -1.1 N.D. +0.3 N.D. +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.6 N.D. +0.6 N.D. -0.3
carbon source Hexanoic (C) +0.0 N.D. +1.2 N.D. +0.2
phage Bu1_10 +0.5 N.D. +0.5 N.D. +0.6
phage Bu1_100 +0.5 N.D. +0.6 N.D. +0.6
carbon source Hexanoic (C) +0.7 N.D. +0.8 N.D. +0.3
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