Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04354 and H281DRAFT_04355 are separated by 115 nucleotidesH281DRAFT_04355 and H281DRAFT_04356 are separated by 83 nucleotidesH281DRAFT_04356 and H281DRAFT_04357 are separated by 4 nucleotidesH281DRAFT_04357 and H281DRAFT_04358 are separated by 35 nucleotides H281DRAFT_04354: H281DRAFT_04354 - hypothetical protein, at 71,545 to 71,928 _04354 H281DRAFT_04355: H281DRAFT_04355 - RNA polymerase, sigma-24 subunit, RpoE, at 72,044 to 72,643 _04355 H281DRAFT_04356: H281DRAFT_04356 - anti sigma-E protein, RseA, at 72,727 to 73,341 _04356 H281DRAFT_04357: H281DRAFT_04357 - sigma E regulatory protein, MucB/RseB, at 73,346 to 74,389 _04357 H281DRAFT_04358: H281DRAFT_04358 - serine protease Do, at 74,425 to 75,951 _04358
Group Condition H281DRAFT_04354 H281DRAFT_04355 H281DRAFT_04356 H281DRAFT_04357 H281DRAFT_04358
phage Bu1_100 -0.3 N.D. -3.0 -0.2 -0.4
carbon source 4-Hydroxybenzoic Acid (C) -0.4 N.D. -1.0 -1.5 -0.9
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. -1.6 -1.1 -1.0
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.0 N.D. -2.1 -1.2 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 N.D. -1.6 -1.4 -0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.1 N.D. -1.3 -1.1 -0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 N.D. -1.3 -0.8 -0.7
carbon source D-Glucose (C) +0.2 N.D. -0.9 -1.9 -0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. -1.1 -0.6 -1.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. -1.1 -0.6 -0.9
phage Bu1_10 -0.4 N.D. -0.4 -0.8 -1.0
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.2 N.D. -1.3 -1.4 +0.0
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.2 N.D. -2.0 -0.5 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 N.D. -1.4 -0.4 -0.5
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. -1.2 -0.7 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 N.D. -0.9 -0.6 -0.9
carbon source D-Glucose (C) +0.0 N.D. -0.6 -1.6 -0.2
phage Bu1_100 -0.5 N.D. -0.0 -1.0 -0.9
carbon source 2'-Deoxyinosine 5 mM (C) -0.2 N.D. -1.8 -0.3 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 N.D. -0.7 -0.7 -0.8
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 N.D. -1.0 -0.8 -0.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.0 N.D. -1.1 -1.1 -0.0
control NoPhageControl -0.3 N.D. -1.3 -0.3 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 N.D. -1.6 -0.0 -0.5
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.1 N.D. -1.2 -0.9 -0.1
carbon source D-Glucose (C) +0.0 N.D. -0.7 -1.0 -0.4
carbon source 2'-Deoxyinosine 10 mM (C) +0.1 N.D. -1.1 -0.7 -0.4
carbon source Malonic (C) +0.2 N.D. -1.3 -0.5 -0.3
carbon source Sebacic (C) +0.1 N.D. +1.2 +1.5 -0.3
carbon source Azelaic (C) -0.2 N.D. +2.7 +2.0 +0.1
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