Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04343 and H281DRAFT_04344 are separated by 93 nucleotidesH281DRAFT_04344 and H281DRAFT_04345 overlap by 4 nucleotidesH281DRAFT_04345 and H281DRAFT_04346 are separated by 386 nucleotidesH281DRAFT_04346 and H281DRAFT_04347 are separated by 101 nucleotides H281DRAFT_04343: H281DRAFT_04343 - protease-4, at 61,703 to 62,707 _04343 H281DRAFT_04344: H281DRAFT_04344 - 16S rRNA (cytidine1402-2'-O)-methyltransferase, at 62,801 to 63,520 _04344 H281DRAFT_04345: H281DRAFT_04345 - septum formation protein, at 63,517 to 64,134 _04345 H281DRAFT_04346: H281DRAFT_04346 - uncharacterized protein, at 64,521 to 65,165 _04346 H281DRAFT_04347: H281DRAFT_04347 - LSU ribosomal protein L32P, at 65,267 to 65,446 _04347
Group Condition H281DRAFT_04343 H281DRAFT_04344 H281DRAFT_04345 H281DRAFT_04346 H281DRAFT_04347
carbon source Dodecandioic (C) -0.2 -0.1 -0.1 -1.8 N.D.
phage Bu1_100 +0.1 -0.5 -0.2 -1.3 N.D.
carbon source Phenylacetic (C) -0.3 -0.3 -0.8 -0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 +0.1 -0.1 -1.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 +0.1 +0.2 -1.2 N.D.
carbon source Sebacic (C) -0.3 -0.0 -0.1 -0.7 N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.0 -0.7 -0.4 +0.0 N.D.
phage Bu1_100 +0.1 -0.7 -0.2 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 +0.2 +0.1 -0.8 N.D.
carbon source butyrate (C) -0.2 -0.1 +0.1 -0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.1 +0.3 -0.9 N.D.
carbon source Phenylacetic (C) -0.2 -0.2 -0.6 +0.2 N.D.
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.1 +0.2 +0.1 -0.9 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.2 -0.1 +0.0 -0.8 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.1 +0.1 -0.9 N.D.
ecofab LB in EcoFAB_3.5mL +0.2 -0.2 +0.1 -0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 -0.1 +0.3 -0.7 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.0 +0.4 -1.0 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.5 -0.0 -0.1 -0.6 N.D.
carbon source D-Glucose 20 mM (C) +0.2 -0.0 +0.3 -0.7 N.D.
carbon source Hexanoic (C) -0.2 -0.1 -0.4 +0.5 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.3 -0.0 +0.4 -0.7 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 +0.4 +0.2 -0.4 N.D.
carbon source 3-hydroxybutyric (C) +0.1 -0.1 -0.2 +0.6 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM +0.0 +0.1 -0.2 +0.8 N.D.
carbon source Gallic Acid (C) -0.2 -0.1 +0.0 +1.0 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.0 +0.2 -0.1 +0.8 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.0 +0.1 +0.0 +1.0 N.D.
carbon source adipate (C) +0.1 -0.1 +0.2 +1.0 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.2 +0.2 -0.1 +1.5 N.D.
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