Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04339 and H281DRAFT_04340 are separated by 733 nucleotidesH281DRAFT_04340 and H281DRAFT_04341 overlap by 8 nucleotidesH281DRAFT_04341 and H281DRAFT_04342 overlap by 4 nucleotidesH281DRAFT_04342 and H281DRAFT_04343 are separated by 42 nucleotides H281DRAFT_04339: H281DRAFT_04339 - RNAse E (EC 3.1.26.12), at 55,501 to 58,824 _04339 H281DRAFT_04340: H281DRAFT_04340 - 23S rRNA pseudouridine955/2504/2580 synthase, at 59,558 to 60,595 _04340 H281DRAFT_04341: H281DRAFT_04341 - phosphoglycolate phosphatase, at 60,588 to 61,247 _04341 H281DRAFT_04342: H281DRAFT_04342 - Ferredoxin subunit of nitrite reductase or a ring-hydroxylating dioxygenase, at 61,244 to 61,660 _04342 H281DRAFT_04343: H281DRAFT_04343 - protease-4, at 61,703 to 62,707 _04343
Group Condition H281DRAFT_04339 H281DRAFT_04340 H281DRAFT_04341 H281DRAFT_04342 H281DRAFT_04343
carbon source Sebacic (C) N.D. -0.3 -0.5 -1.5 -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. +0.0 -0.5 -1.0 -0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. -0.5 -0.4 -0.7 +0.0
carbon source Pimelic (C) N.D. -0.4 -0.3 -0.3 -0.2
carbon source butyrate (C) N.D. -0.4 -0.1 -0.5 -0.2
carbon source Valeric (C) N.D. -0.3 -0.1 -0.7 +0.0
carbon source Protocatechuic Acid (C) N.D. -0.6 -0.1 -0.3 -0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x N.D. -0.5 -0.1 -0.5 +0.0
carbon source Azelaic (C) N.D. -0.2 -0.0 -0.8 +0.1
carbon source 4-Hydroxybenzoic Acid (C) N.D. -0.7 -0.1 -0.2 +0.0
carbon source acetate (C) N.D. -0.1 -0.1 -0.9 +0.1
carbon source p-Coumaric (C) N.D. -0.2 +0.0 -0.6 -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x N.D. +0.7 -0.5 -0.9 -0.1
carbon source Phenylacetic (C) N.D. -0.2 +0.2 -0.5 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. -0.5 -0.2 +0.2 -0.1
carbon source Hexanoic (C) N.D. -0.8 -0.2 +0.3 -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.0 +0.1 -0.6 -0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM N.D. +0.2 +0.0 -0.9 +0.0
carbon source Protocatechuic Acid (C) N.D. -0.8 -0.1 +0.2 -0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM N.D. +0.3 -0.5 -0.2 +0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM N.D. +0.4 -0.3 -0.5 -0.0
carbon source butyrate (C) N.D. +0.1 +0.3 -0.6 -0.3
carbon source Hexanoic (C) N.D. -0.5 -0.0 +0.5 -0.2
carbon source Valeric (C) N.D. -0.4 +0.1 +0.5 -0.0
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.2 -0.3 -0.2 +0.4
carbon source acetate (C) N.D. -0.2 +0.2 +0.4 -0.2
phage Bu1_100 N.D. +0.8 -0.0 -0.3 +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) N.D. +0.2 -0.0 +0.5 +0.3
carbon source 2-Deoxy-D-Ribose 10 mM (C) N.D. +0.3 +0.1 +0.8 -0.1
phage Bu1_10 N.D. +0.7 +0.4 -0.1 +0.3
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