Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04288 and H281DRAFT_04289 are separated by 85 nucleotidesH281DRAFT_04289 and H281DRAFT_04290 are separated by 21 nucleotidesH281DRAFT_04290 and H281DRAFT_04291 are separated by 241 nucleotidesH281DRAFT_04291 and H281DRAFT_04292 are separated by 172 nucleotides H281DRAFT_04288: H281DRAFT_04288 - transcriptional regulator, AsnC family, at 4,709 to 5,209 _04288 H281DRAFT_04289: H281DRAFT_04289 - DNA repair photolyase, at 5,295 to 6,440 _04289 H281DRAFT_04290: H281DRAFT_04290 - TM2 domain-containing membrane protein YozV, at 6,462 to 6,929 _04290 H281DRAFT_04291: H281DRAFT_04291 - hypothetical protein, at 7,171 to 8,340 _04291 H281DRAFT_04292: H281DRAFT_04292 - SSU ribosomal protein S16P, at 8,513 to 8,767 _04292
Group Condition H281DRAFT_04288 H281DRAFT_04289 H281DRAFT_04290 H281DRAFT_04291 H281DRAFT_04292
carbon source adipate (C) -0.6 -0.4 -0.6 -0.2 N.D.
carbon source succinate (C) -0.5 -0.2 -0.7 -0.2 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.3 +0.0 -1.2 -0.1 N.D.
carbon source succinate (C) -0.0 -0.2 -0.8 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -1.1 +0.1 -0.1 -0.1 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 +0.1 -1.1 +0.1 N.D.
carbon source Malonic (C) -0.3 -0.0 -0.5 -0.1 N.D.
carbon source Protocatechuic Acid (C) -0.7 -0.1 -0.3 +0.0 N.D.
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.1 -0.2 -0.8 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 +0.0 -0.2 -0.0 N.D.
carbon source 3-hydroxybutyric (C) -0.3 -0.0 -0.4 -0.1 N.D.
carbon source D-Galactose (C) -0.4 -0.1 -0.3 -0.1 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.5 -0.0 -0.3 -0.1 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.1 +0.1 -0.8 -0.1 N.D.
carbon source adipate (C) -0.4 -0.4 +0.3 -0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.9 +0.0 +0.3 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 +0.1 +0.1 -0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.1 +0.0 -0.7 +0.2 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.3 +0.1 -0.7 -0.1 N.D.
carbon source D-Glucose (C) -0.2 +0.2 -0.5 +0.2 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.3 +0.0 -0.4 -0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 -0.0 -0.5 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.8 -0.0 +0.5 -0.0 N.D.
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.4 +0.1 -0.8 +0.2 N.D.
carbon source 4-Methyl-2-oxopentanoic (C) -0.3 -0.0 +0.5 -0.1 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.6 +0.2 +0.4 +0.0 N.D.
carbon source 4-Hydroxybenzoic Acid (C) +0.1 -0.1 +0.7 -0.3 N.D.
carbon source Azelaic (C) +0.5 -0.1 +0.3 -0.1 N.D.
phage Bu1_100 +0.7 +0.1 +0.6 -0.1 N.D.
phage Bu1_10 +0.6 +0.2 +0.7 -0.1 N.D.
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