Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04145 and H281DRAFT_04146 overlap by 4 nucleotidesH281DRAFT_04146 and H281DRAFT_04147 are separated by 46 nucleotidesH281DRAFT_04147 and H281DRAFT_04148 are separated by 43 nucleotidesH281DRAFT_04148 and H281DRAFT_04149 overlap by 14 nucleotides H281DRAFT_04145: H281DRAFT_04145 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 254,923 to 255,660 _04145 H281DRAFT_04146: H281DRAFT_04146 - xylulokinase, at 255,657 to 257,201 _04146 H281DRAFT_04147: H281DRAFT_04147 - L-iditol 2-dehydrogenase, at 257,248 to 258,345 _04147 H281DRAFT_04148: H281DRAFT_04148 - monosaccharide ABC transporter membrane protein, CUT2 family, at 258,389 to 259,396 _04148 H281DRAFT_04149: H281DRAFT_04149 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 259,383 to 260,903 _04149
Group Condition H281DRAFT_04145 H281DRAFT_04146 H281DRAFT_04147 H281DRAFT_04148 H281DRAFT_04149
carbon source adipate (C) -0.2 -0.7 +0.0 -1.2 N.D.
carbon source 2'-Deoxyinosine 10 mM (C) -0.2 -0.5 -0.4 -0.8 N.D.
carbon source Dodecandioic (C) +0.2 -0.5 -0.5 -1.0 N.D.
carbon source adipate (C) -0.1 -0.9 -0.6 -0.0 N.D.
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.4 -0.1 -1.2 N.D.
carbon source Valeric (C) -0.2 -0.3 -0.0 -0.9 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.1 -1.0 -0.3 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.3 -0.0 -0.9 N.D.
phage Bu1_100 -1.0 -0.2 +0.2 -0.3 N.D.
carbon source Pimelic (C) -0.2 -0.4 -0.0 -0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.1 -0.2 -0.1 -0.7 N.D.
carbon source acetate (C) -0.2 -0.1 -0.2 -0.7 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.1 -0.2 -0.4 -0.4 N.D.
carbon source 2-Deoxy-D-ribonic lithium salt (C) +0.1 -0.3 -0.2 -0.6 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -0.4 +0.1 -0.8 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.1 +0.2 -0.4 -0.7 N.D.
carbon source Protocatechuic Acid (C) +0.2 -0.9 +0.0 -0.3 N.D.
carbon source Malonic (C) -0.7 -0.4 +0.1 +0.2 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 +0.3 +0.0 -0.9 N.D.
carbon source 2'-Deoxyinosine 10 mM (C) +0.5 -1.2 -0.0 +0.0 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.4 +0.5 -0.3 -0.3 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.2 +0.2 -0.5 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.5 +0.4 -0.2 +0.4 N.D.
phage Bu1_10 +0.2 +0.5 -0.0 -0.4 N.D.
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.3 +0.2 -0.4 +0.4 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM -0.2 +0.3 +0.4 +0.3 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.2 +0.4 +0.2 +0.4 N.D.
carbon source Protocatechuic Acid (C) +0.4 +0.0 -0.1 +0.7 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.2 +0.1 +0.4 +0.7 N.D.
carbon source Sebacic (C) +0.4 +0.2 +0.2 +0.6 N.D.
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