Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04090 and H281DRAFT_04091 are separated by 364 nucleotidesH281DRAFT_04091 and H281DRAFT_04092 are separated by 41 nucleotidesH281DRAFT_04092 and H281DRAFT_04093 overlap by 4 nucleotidesH281DRAFT_04093 and H281DRAFT_04094 overlap by 4 nucleotides H281DRAFT_04090: H281DRAFT_04090 - high-affinity nickel-transport protein, at 195,931 to 196,959 _04090 H281DRAFT_04091: H281DRAFT_04091 - peptide/nickel transport system substrate-binding protein, at 197,324 to 198,997 _04091 H281DRAFT_04092: H281DRAFT_04092 - peptide/nickel transport system permease protein, at 199,039 to 200,046 _04092 H281DRAFT_04093: H281DRAFT_04093 - peptide/nickel transport system permease protein, at 200,043 to 200,912 _04093 H281DRAFT_04094: H281DRAFT_04094 - peptide/nickel transport system ATP-binding protein, at 200,909 to 203,143 _04094
Group Condition H281DRAFT_04090 H281DRAFT_04091 H281DRAFT_04092 H281DRAFT_04093 H281DRAFT_04094
carbon source Hexanoic (C) +0.2 -0.5 -0.3 -1.0 -0.2
carbon source Azelaic (C) -0.1 -0.5 -0.0 -1.1 +0.5
carbon source D-Glucose (C) -0.0 -0.4 -0.3 +0.0 -0.2
carbon source Hexanoic (C) +0.0 -0.4 -0.2 -0.4 +0.1
carbon source Valeric (C) +0.1 +0.3 -0.5 -0.5 -0.1
carbon source Suberic (C) +0.2 -0.4 +0.1 -0.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.5 -0.2 +0.0 +0.3
carbon source propionate (C) +0.3 -0.5 +0.3 -0.6 -0.1
carbon source butyrate (C) +0.2 +0.2 -0.1 -0.7 -0.1
carbon source succinate (C) -0.1 -0.6 -0.0 -0.2 +0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 +0.4 +0.3 -0.4 -0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.2 +0.4 -0.2 -0.2 -0.2
carbon source butyrate (C) +0.3 -0.8 +0.2 +0.3 +0.0
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.1 -0.5 -0.1 +0.5 +0.1
phage Bu1_100 -0.1 -0.5 -0.1 +0.4 +0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.1 +0.3 +0.4 -0.1 -0.4
carbon source Gallic Acid (C) +0.3 -0.1 +0.0 -0.3 +0.2
control NoPhageControl -0.1 +0.0 -0.2 -0.1 +0.5
carbon source Valeric (C) +0.3 -0.0 -0.3 +0.2 +0.4
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.3 +0.1 +0.3 +0.4 +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.2 +0.0 +0.1 +0.8 +0.1
carbon source Glycerol (C) +0.2 +0.4 +0.2 +0.2 -0.1
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.0 +0.2 +0.3 +0.3 +0.2
phage Bu1_100 +0.3 -0.1 -0.0 +0.9 -0.1
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.1 +0.0 +0.4 +0.4 +0.3
carbon source Sebacic (C) +0.3 +0.5 +0.3 +0.5 -0.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.1 +0.3 +0.3 +0.5 +0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.1 +0.4 +0.2 +0.6 +0.2
carbon source 2'-Deoxyinosine 10 mM (C) +0.2 +0.3 +0.3 +0.5 +0.3
carbon source 4-Hydroxybenzoic Acid (C) +0.1 +0.9 +0.9 +0.7 +1.1
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