Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04042 and H281DRAFT_04043 are separated by 77 nucleotidesH281DRAFT_04043 and H281DRAFT_04044 are separated by 56 nucleotidesH281DRAFT_04044 and H281DRAFT_04045 overlap by 1 nucleotidesH281DRAFT_04045 and H281DRAFT_04046 overlap by 4 nucleotides H281DRAFT_04042: H281DRAFT_04042 - phenylacetate transporter (from data), at 141,182 to 142,702 _04042 H281DRAFT_04043: H281DRAFT_04043 - Pimeloyl-ACP methyl ester carboxylesterase, at 142,780 to 143,745 _04043 H281DRAFT_04044: H281DRAFT_04044 - D-aminopeptidase DppA. Metallo peptidase. MEROPS family M55, at 143,802 to 144,635 _04044 H281DRAFT_04045: H281DRAFT_04045 - L-aminopeptidase DmpA. Serine peptidase. MEROPS family S58, at 144,635 to 145,747 _04045 H281DRAFT_04046: H281DRAFT_04046 - glutathione transport system permease protein, at 145,744 to 146,649 _04046
Group Condition H281DRAFT_04042 H281DRAFT_04043 H281DRAFT_04044 H281DRAFT_04045 H281DRAFT_04046
carbon source Phenylacetic (C) -2.6 +0.2 +0.3 +0.0 +0.1
carbon source Phenylacetic (C) -2.3 +0.2 +0.6 +0.2 -0.1
carbon source Protocatechuic Acid (C) +0.2 -0.1 -0.4 -0.1 +0.2
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.1 +0.0 -0.2 +0.3 -0.5
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x -0.1 +0.2 +0.2 -0.4 +0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM +0.0 -0.3 +0.3 -0.3 +0.3
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.0 -0.1 +0.6 -0.2 -0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.1 -0.0 -0.3 +0.1 +0.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 -0.2 -0.1 +0.3 +0.3
carbon source Sebacic (C) -0.1 +0.1 +0.6 -0.1 -0.0
carbon source adipate (C) -0.1 -0.2 +0.5 -0.0 +0.2
carbon source Hexanoic (C) +0.1 +0.3 -0.4 -0.1 +0.5
carbon source butyrate (C) +0.1 -0.2 -0.1 +0.3 +0.3
carbon source 4-Hydroxybenzoic Acid (C) +0.5 -0.4 +0.3 -0.2 +0.2
carbon source succinate (C) -0.0 -0.3 +0.2 +0.3 +0.3
carbon source Gallic Acid (C) +0.3 -0.2 +0.4 -0.0 +0.1
carbon source Protocatechuic Acid (C) +0.5 -0.1 +0.3 -0.3 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 +0.3 +0.2 -0.2 +0.5
carbon source Dodecandioic (C) +0.2 -0.1 +0.5 -0.0 +0.1
phage Bu1_100 +0.1 -0.4 +0.0 +0.3 +0.5
carbon source 2-furoic (C) +0.1 -0.1 +0.4 +0.1 +0.2
carbon source Valeric (C) +0.3 -0.1 +0.4 +0.1 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 +0.2 +0.5 -0.1 +0.4
carbon source Malonic (C) -0.2 -0.0 +0.4 +0.4 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 +0.1 +0.2 +0.4 +0.3
carbon source Protocatechuic Acid (C) +0.0 +0.1 +0.5 -0.1 +0.3
phage Bu1_10 +0.3 +0.1 +0.6 +0.0 -0.1
carbon source butyrate (C) +0.1 +0.2 +0.4 +0.3 -0.1
carbon source 3-Hydroxypropionate (C) +0.1 +0.0 +0.6 +0.0 +0.2
carbon source acetate (C) +0.2 -0.1 +0.6 +0.2 +0.1
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