Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_04035 and H281DRAFT_04036 are separated by 415 nucleotidesH281DRAFT_04036 and H281DRAFT_04037 are separated by 62 nucleotidesH281DRAFT_04037 and H281DRAFT_04038 are separated by 50 nucleotidesH281DRAFT_04038 and H281DRAFT_04039 are separated by 54 nucleotides H281DRAFT_04035: H281DRAFT_04035 - hypothetical protein, at 135,734 to 136,117 _04035 H281DRAFT_04036: H281DRAFT_04036 - tRNA (guanine-N(7)-)-methyltransferase (EC 2.1.1.33), at 136,533 to 137,321 _04036 H281DRAFT_04037: H281DRAFT_04037 - Undecaprenyl-diphosphatase (EC 3.6.1.27), at 137,384 to 138,235 _04037 H281DRAFT_04038: H281DRAFT_04038 - Protein of unknown function (DUF1439), at 138,286 to 138,876 _04038 H281DRAFT_04039: H281DRAFT_04039 - hypothetical protein, at 138,931 to 139,251 _04039
Group Condition H281DRAFT_04035 H281DRAFT_04036 H281DRAFT_04037 H281DRAFT_04038 H281DRAFT_04039
carbon source Valeric (C) -0.1 -0.6 N.D. +0.2 -1.6
carbon source Malonic (C) +0.2 -0.8 N.D. +0.1 -1.2
carbon source 2-Deoxy-D-Ribose (C) -0.0 -1.1 N.D. -0.0 -0.4
carbon source 2-Deoxy-D-Ribose (C) -0.0 -1.3 N.D. -0.0 -0.3
carbon source 2-Deoxy-D-Ribose (C) +0.0 -1.1 N.D. -0.2 -0.3
carbon source 2-Deoxy-D-Ribose (C) +0.0 -1.6 N.D. -0.0 +0.2
carbon source butyrate (C) -0.1 -0.6 N.D. -0.0 -0.7
phage Bu1_10 +0.0 +0.1 N.D. +0.3 -1.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.7 N.D. +0.0 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 -0.0 N.D. +0.2 -1.2
carbon source 2'-Deoxyinosine 5 mM (C) +0.1 -0.7 N.D. -0.0 -0.5
carbon source 2-Deoxy-D-ribonic lithium salt (C) -0.1 -0.8 N.D. +0.1 -0.3
carbon source 2'-Deoxyinosine 10 mM (C) +0.2 -0.8 N.D. +0.3 -0.8
carbon source Phenylacetic (C) +0.1 -1.0 N.D. +0.2 -0.2
carbon source Malonic (C) +0.1 -0.4 N.D. +0.2 -0.8
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.1 -0.8 N.D. -0.2 +0.2
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.2 +0.4 N.D. -0.2 -1.0
carbon source 4-Hydroxybenzoic Acid (C) +0.2 -2.1 N.D. +0.5 +1.0
carbon source Hydroxy-L-Proline (C) -0.1 -0.6 N.D. -0.1 +0.6
carbon source adipate (C) +0.0 +0.7 N.D. -0.2 -0.7
carbon source Protocatechuic Acid (C) +0.2 -0.7 N.D. +0.2 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.3 +0.8 N.D. +0.2 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.4 +0.8 N.D. +0.3 +0.2
carbon source acetate (C) -0.0 -0.2 N.D. +0.3 +0.9
carbon source 2'-Deoxyinosine 5 mM (C) +0.3 -0.3 N.D. +0.3 +0.6
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.1 +0.6 N.D. +0.3 +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.2 +0.1 N.D. +0.1 +1.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.1 +0.3 N.D. +0.2 +1.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 -0.3 N.D. +0.3 +1.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.1 -0.4 N.D. +0.1 +2.1
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