Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03957 and H281DRAFT_03958 are separated by 159 nucleotidesH281DRAFT_03958 and H281DRAFT_03959 are separated by 62 nucleotidesH281DRAFT_03959 and H281DRAFT_03960 are separated by 124 nucleotidesH281DRAFT_03960 and H281DRAFT_03961 are separated by 410 nucleotides H281DRAFT_03957: H281DRAFT_03957 - D-galactonate transporter, at 59,952 to 61,301 _03957 H281DRAFT_03958: H281DRAFT_03958 - DNA-binding transcriptional regulator, GntR family, at 61,461 to 62,141 _03958 H281DRAFT_03959: H281DRAFT_03959 - aspartyl-tRNA(Asn)/glutamyl-tRNA(Gln) amidotransferase subunit A, at 62,204 to 63,583 _03959 H281DRAFT_03960: H281DRAFT_03960 - disulfide bond formation protein DsbB, at 63,708 to 64,217 _03960 H281DRAFT_03961: H281DRAFT_03961 - xanthine dehydrogenase, small subunit (EC 1.17.1.4) (from data), at 64,628 to 66,256 _03961
Group Condition H281DRAFT_03957 H281DRAFT_03958 H281DRAFT_03959 H281DRAFT_03960 H281DRAFT_03961
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.0 -0.3 -0.3 N.D. -1.7
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.0 -0.4 +0.1 N.D. -1.7
carbon source 2'-Deoxyinosine 10 mM (C) +0.2 -0.7 -0.3 N.D. -0.6
carbon source 2'-Deoxyinosine 10 mM (C) +0.2 -0.5 -0.2 N.D. -0.7
carbon source Hexanoic (C) +0.0 -0.4 -0.4 N.D. -0.3
carbon source 2'-Deoxyinosine 5 mM (C) +0.2 -0.6 -0.3 N.D. -0.4
carbon source succinate (C) +0.1 -0.6 -0.6 N.D. +0.1
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.1 -0.4 -0.2 N.D. -0.5
carbon source 2'-Deoxyinosine 5 mM (C) +0.1 -0.5 -0.0 N.D. -0.5
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) +0.1 -0.4 -0.1 N.D. -0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.1 -0.8 -0.5 N.D. +0.5
carbon source butyrate (C) -0.0 +0.3 -0.5 N.D. -0.5
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.2 -0.6 -0.3 N.D. -0.1
carbon source D-Glucose (C) -0.2 +0.2 -0.3 N.D. -0.1
carbon source 2-Deoxy-D-ribonic lithium salt 10 mM (C) +0.3 -0.4 -0.2 N.D. -0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 -0.5 -0.2 N.D. +0.2
phage Bu1_100 -0.3 +0.2 -0.4 N.D. +0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.0 -0.5 -0.3 N.D. +0.6
carbon source Sebacic (C) -0.0 -0.3 -0.1 N.D. +0.4
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.1 +0.1 +0.3 N.D. -0.4
carbon source 2-Deoxy-D-Ribose 20 mM (C) +0.2 -0.3 -0.2 N.D. +0.3
carbon source butyrate (C) +0.0 +0.3 -0.4 N.D. +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.2 -0.3 N.D. +0.3
carbon source Hexanoic (C) +0.2 +0.4 -0.3 N.D. +0.0
Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.1 -0.0 N.D. +0.6
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.0 +0.4 +0.4 N.D. -0.3
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.2 +0.3 +0.3 N.D. -0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 +0.4 -0.1 N.D. -0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.2 +0.6 +0.1 N.D. -0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.3 +0.5 +0.2 N.D. +0.0
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