Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03944 and H281DRAFT_03945 are separated by 182 nucleotidesH281DRAFT_03945 and H281DRAFT_03946 overlap by 4 nucleotidesH281DRAFT_03946 and H281DRAFT_03947 are separated by 87 nucleotidesH281DRAFT_03947 and H281DRAFT_03948 are separated by 112 nucleotides H281DRAFT_03944: H281DRAFT_03944 - 2-polyprenyl-6-methoxyphenol hydroxylase, at 45,183 to 46,907 _03944 H281DRAFT_03945: H281DRAFT_03945 - cobalt-zinc-cadmium efflux system protein, at 47,090 to 48,382 _03945 H281DRAFT_03946: H281DRAFT_03946 - transcriptional regulator, ArsR family, at 48,379 to 48,747 _03946 H281DRAFT_03947: H281DRAFT_03947 - Tetratricopeptide repeat-containing protein, at 48,835 to 50,718 _03947 H281DRAFT_03948: H281DRAFT_03948 - metabolite-proton symporter, at 50,831 to 52,132 _03948
Group Condition H281DRAFT_03944 H281DRAFT_03945 H281DRAFT_03946 H281DRAFT_03947 H281DRAFT_03948
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.1 +0.2 -0.0 -2.0 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.1 -0.5 -1.4 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.2 -0.5 -1.4 +0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.1 -0.7 -1.4 +0.2
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM +0.0 -0.3 -1.3 -0.1 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.4 -0.8 -1.2 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.4 +0.1 -0.6 -1.6 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.2 -0.1 -1.4 -0.0
ecofab LB in EcoFAB_3.5mL +0.2 -0.2 -0.6 -0.1 -0.3
carbon source D-Glucose (C) +0.2 -0.0 -0.9 -0.4 +0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 +0.4 -0.6 -1.1 -0.0
carbon source 2-Deoxy-D-Ribose 10 mM (C) -0.0 -0.2 -1.0 +0.1 +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.0 +0.0 -0.8 -0.2 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.2 +0.1 -0.1 -1.0 +0.0
control NoPhageControl +0.1 +0.3 -0.6 -0.5 -0.1
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 +0.1 -0.5 -0.6 -0.1
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 +0.1 -0.1 -1.0 +0.1
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x +0.3 -0.3 -0.6 -0.3 +0.3
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.1x; and D-Glucose 99.9 mM +0.0 -0.2 -0.7 +0.3 +0.2
carbon source Dodecandioic (C) -0.3 +0.3 +0.3 -0.2 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.0 +0.5 +0.1 -0.8 +0.0
supernatant RCH2_defined_glucose with Supernatant; Trichoderma harzianum M10 and Trichoderma harzanium TH1 and Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x +0.2 +0.2 -0.7 +0.1 +0.2
carbon source 4-Hydroxybenzoic Acid (C) +0.3 +0.2 -1.2 +0.7 +0.2
carbon source Protocatechuic Acid (C) +0.1 -0.1 -0.4 +0.4 +0.3
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.6 +0.3 +0.1 -0.7 +0.2
carbon source Sebacic (C) -0.0 +0.3 +0.8 -0.3 +0.1
carbon source Malonic (C) -0.2 +0.2 +0.7 +0.4 -0.0
carbon source butyrate (C) +0.1 +0.2 +0.9 +0.2 -0.1
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.3 -0.2 +0.1 +2.7 -0.5
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.4 -0.5 +0.0 +2.7 -0.7
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