Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03903 and H281DRAFT_03904 are separated by 237 nucleotidesH281DRAFT_03904 and H281DRAFT_03905 are separated by 14 nucleotidesH281DRAFT_03905 and H281DRAFT_03906 overlap by 11 nucleotidesH281DRAFT_03906 and H281DRAFT_03907 are separated by 241 nucleotides H281DRAFT_03903: H281DRAFT_03903 - electron transfer flavoprotein beta subunit, at 3 to 653 _03903 H281DRAFT_03904: H281DRAFT_03904 - D-methionine transport system substrate-binding protein, at 891 to 1,688 _03904 H281DRAFT_03905: H281DRAFT_03905 - D-methionine transport system permease protein, at 1,703 to 2,356 _03905 H281DRAFT_03906: H281DRAFT_03906 - D-methionine transport system ATP-binding protein, at 2,346 to 3,380 _03906 H281DRAFT_03907: H281DRAFT_03907 - Lysophospholipase, alpha-beta hydrolase superfamily, at 3,622 to 4,575 _03907
Group Condition H281DRAFT_03903 H281DRAFT_03904 H281DRAFT_03905 H281DRAFT_03906 H281DRAFT_03907
carbon source adipate (C) N.D. -2.0 +1.5 -2.6 +0.2
control NoPhageControl N.D. +0.0 -1.2 -1.2 +0.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days N.D. -0.1 -0.5 -1.3 +0.0
carbon source adipate (C) N.D. -1.6 +1.7 -1.3 +0.1
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.2 -0.4 -0.3 -0.2
phage Bu1_100 N.D. -0.2 -0.9 +0.3 +0.2
lb LB N.D. -0.1 -0.4 -0.2 +0.2
carbon source Azelaic (C) N.D. -0.2 -0.6 -0.0 +0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.0 -0.4 -0.2 +0.3
carbon source propionate (C) N.D. -0.1 +0.2 -0.5 +0.2
carbon source Protocatechuic Acid (C) N.D. -0.1 +0.1 -0.4 +0.3
carbon source 2'-Deoxyinosine 10 mM (C) N.D. -0.0 +0.6 -0.3 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days N.D. +0.2 -0.3 +0.1 +0.3
carbon source 2-Deoxy-D-ribonic lithium salt (C) N.D. +0.1 +0.5 -0.3 +0.0
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.67x; and D-Glucose 37 mM N.D. +0.2 -0.3 +0.4 +0.2
carbon source Gallic Acid (C) N.D. +0.1 +0.7 -0.3 +0.1
carbon source Malonic (C) N.D. -0.1 +0.8 -0.1 +0.0
carbon source Sebacic (C) N.D. -0.1 -0.0 +0.9 -0.1
phage Bu1_10 N.D. +0.3 -0.4 +0.3 +0.4
carbon source butyrate (C) N.D. +0.2 +0.6 +0.1 -0.1
carbon source Hexanoic (C) N.D. +0.3 +0.4 -0.1 +0.3
carbon source butyrate (C) N.D. +0.3 +0.6 +0.0 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. +0.1 +0.5 +0.1 +0.2
phage Bu1_100 N.D. +0.3 +0.5 +0.1 +0.1
carbon source Protocatechuic Acid (C) N.D. +0.2 +0.3 +0.4 +0.1
ecofab LB in EcoFAB_3.5mL N.D. -0.2 +0.5 +0.6 -0.0
carbon source 2-Deoxy-D-Ribose 20 mM (C) N.D. +0.1 +0.3 +0.4 +0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days N.D. -0.1 +0.5 +0.4 +0.3
carbon source succinate (C) N.D. +0.2 +0.3 +0.4 +0.1
carbon source D,L-Lactate (C) N.D. +0.1 +0.4 +0.6 +0.1
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