Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03898 and H281DRAFT_03899 overlap by 4 nucleotidesH281DRAFT_03899 and H281DRAFT_03900 are separated by 22 nucleotidesH281DRAFT_03900 and H281DRAFT_03901 are separated by 280 nucleotidesH281DRAFT_03901 and H281DRAFT_03902 are separated by 91 nucleotides H281DRAFT_03898: H281DRAFT_03898 - DUF2300 domain-containing protein YfaQ, at 433,953 to 435,737 _03898 H281DRAFT_03899: H281DRAFT_03899 - Uncharacterized conserved protein YfaP, DUF2135 family, at 435,734 to 436,618 _03899 H281DRAFT_03900: H281DRAFT_03900 - Uncharacterized conserved protein YfaP, DUF2135 family, at 436,641 to 437,441 _03900 H281DRAFT_03901: H281DRAFT_03901 - hypothetical protein, at 437,722 to 438,114 _03901 H281DRAFT_03902: H281DRAFT_03902 - RNA polymerase, sigma 70 subunit, RpoD, at 438,206 to 440,200 _03902
Group Condition H281DRAFT_03898 H281DRAFT_03899 H281DRAFT_03900 H281DRAFT_03901 H281DRAFT_03902
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 +0.4 +0.7 +0.2 -4.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.2 -0.3 +0.1 -0.0 -2.3
carbon source Phenylacetic (C) +0.3 +0.4 -0.0 -0.3 -2.9
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.4 +0.3 +0.6 -0.1 -2.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.7 -0.2 +0.2 +0.3 -1.8
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.0 +0.4 -0.1 -0.1 -2.0
carbon source Hexanoic (C) +0.1 +0.1 +0.0 -0.7 -1.1
ecofab LB in EcoFAB_3.5mL -0.1 -0.0 +0.2 -0.1 -1.6
carbon source Phenylacetic (C) +0.4 +0.3 -0.0 -0.2 -1.8
carbon source adipate (C) -0.7 +0.1 +0.4 -0.4 -0.6
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.1 -0.4 +0.2 +0.5 -1.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.3 -0.3 +0.1 -0.1 -1.1
lb LB -0.2 -0.0 +0.1 +0.2 -1.1
carbon source Sebacic (C) -0.4 +0.3 -0.0 -0.5 -0.3
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 +0.2 -0.1 +0.3 -0.9
carbon source acetate (C) +0.2 -0.2 +0.3 -0.3 -0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.4 -0.2 +0.1 -0.9
carbon source Protocatechuic Acid (C) +0.6 -0.0 +0.1 -0.5 -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +0.1 +0.3 -0.1 -1.4
carbon source 2-Deoxy-D-Ribose (C) -0.2 +0.4 +0.2 -0.5 -0.2
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 +0.2 -0.2 -0.1 -0.7
carbon source succinate (C) +0.1 +0.3 +0.5 -0.3 -0.6
carbon source Hexanoic (C) +0.2 +0.2 +0.3 +0.2 -0.9
carbon source 2-Deoxy-D-Ribose 10 mM (C) +0.0 +0.4 +0.3 +0.1 -0.8
carbon source butyrate (C) +0.0 +0.5 +0.4 -0.1 -0.8
phage Bu1_100 +0.3 +0.4 +0.1 +0.1 -0.7
carbon source Valeric (C) +0.9 +0.1 +0.2 -0.3 -0.6
carbon source Malonic (C) +0.2 +0.3 +0.4 +0.2 -0.5
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.1 -0.4 +0.3 -0.1 +2.2
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.2 +0.0 +0.1 -0.5 +2.2
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