Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03786 and H281DRAFT_03787 are separated by 59 nucleotidesH281DRAFT_03787 and H281DRAFT_03788 overlap by 4 nucleotidesH281DRAFT_03788 and H281DRAFT_03789 are separated by 99 nucleotidesH281DRAFT_03789 and H281DRAFT_03790 are separated by 24 nucleotides H281DRAFT_03786: H281DRAFT_03786 - Lecithin retinol acyltransferase, at 308,231 to 308,722 _03786 H281DRAFT_03787: H281DRAFT_03787 - hypothetical protein, at 308,782 to 309,033 _03787 H281DRAFT_03788: H281DRAFT_03788 - transcriptional regulator, LysR family, at 309,030 to 309,908 _03788 H281DRAFT_03789: H281DRAFT_03789 - beta-lactamase class A, at 310,008 to 310,973 _03789 H281DRAFT_03790: H281DRAFT_03790 - Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains, at 310,998 to 311,348 _03790
Group Condition H281DRAFT_03786 H281DRAFT_03787 H281DRAFT_03788 H281DRAFT_03789 H281DRAFT_03790
carbon source Hexanoic (C) +0.1 N.D. +0.4 -0.5 -1.6
carbon source D-Glucose (C) +0.2 N.D. -0.2 -0.1 -1.5
carbon source Dodecandioic (C) -0.1 N.D. -0.2 +0.0 -1.2
carbon source Gallic Acid (C) -0.2 N.D. -0.2 -0.0 -1.0
phage Bu1_100 -0.4 N.D. -0.5 +0.3 -0.3
carbon source butyrate (C) -0.6 N.D. +0.3 -0.3 -0.2
carbon source p-Coumaric (C) -0.3 N.D. +0.2 +0.1 -0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.2 N.D. -0.4 +0.4 -0.6
carbon source Valeric (C) +0.2 N.D. +0.2 +0.1 -0.8
carbon source acetate (C) -0.3 N.D. -0.1 -0.3 +0.6
carbon source 4-Hydroxybenzoic Acid (C) -0.5 N.D. +0.2 -0.6 +0.8
carbon source Hydroxy-L-Proline (C) +0.1 N.D. +0.3 +0.3 -0.6
lb LB -0.4 N.D. -0.3 +0.0 +0.9
carbon source D,L-Lactate (C) -0.4 N.D. +0.1 -0.1 +0.7
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -0.7 N.D. +0.1 +0.3 +0.7
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.0 N.D. -0.5 -0.2 +1.2
carbon source adipate (C) +0.0 N.D. +0.6 +0.3 -0.4
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -0.3 N.D. -0.2 +0.3 +0.7
carbon source 2'-Deoxyinosine 10 mM (C) -0.4 N.D. +0.1 -0.1 +1.2
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days +0.3 N.D. -0.2 -0.2 +0.8
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.5 N.D. +0.2 +0.2 +0.9
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.2 N.D. +0.2 +0.1 +0.8
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 N.D. -0.1 -0.2 +1.0
carbon source 2-Deoxyadenosine 5-monophosphate 5 mM (C) -0.3 N.D. +0.4 +0.2 +0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 N.D. +0.6 +0.6 -0.1
supernatant LB 0.5x with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x +0.1 N.D. +0.2 +0.5 +0.6
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.2 N.D. +0.3 +0.8 +0.6
ecofab LB in EcoFAB_3.5mL +0.2 N.D. +0.2 -0.1 +1.1
control NoPhageControl +0.3 N.D. +0.2 +0.3 +0.7
phage Bu1_100 +0.5 N.D. -0.3 +0.8 +1.0
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