Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03771 and H281DRAFT_03772 are separated by 308 nucleotidesH281DRAFT_03772 and H281DRAFT_03773 overlap by 22 nucleotidesH281DRAFT_03773 and H281DRAFT_03774 are separated by 48 nucleotidesH281DRAFT_03774 and H281DRAFT_03775 are separated by 380 nucleotides H281DRAFT_03771: H281DRAFT_03771 - hypothetical protein, at 288,350 to 288,568 _03771 H281DRAFT_03772: H281DRAFT_03772 - hypothetical protein, at 288,877 to 289,404 _03772 H281DRAFT_03773: H281DRAFT_03773 - serine/threonine protein kinase, at 289,383 to 291,551 _03773 H281DRAFT_03774: H281DRAFT_03774 - Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain, at 291,600 to 293,600 _03774 H281DRAFT_03775: H281DRAFT_03775 - protein of unknown function (DUF4399), at 293,981 to 294,484 _03775
Group Condition H281DRAFT_03771 H281DRAFT_03772 H281DRAFT_03773 H281DRAFT_03774 H281DRAFT_03775
carbon source Malonic (C) -1.3 N.D. -0.1 +0.3 -1.7
phage Bu1_100 -0.6 N.D. -0.1 +0.3 -2.5
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days -2.3 N.D. -0.0 -0.4 -0.0
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=no_outgrowth; Time=14_days -0.8 N.D. +0.0 -0.4 -1.5
carbon source propionate (C) -0.2 N.D. +0.1 -0.1 -1.8
carbon source 2'-Deoxyinosine 10 mM (C) -0.5 N.D. +0.1 -0.0 -1.5
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.8 N.D. -0.1 -0.1 -0.8
carbon source Protocatechuic Acid (C) -1.0 N.D. -0.2 -0.0 -0.6
carbon source Protocatechuic Acid (C) -0.3 N.D. -0.4 -0.5 -0.5
carbon source 2-Deoxy-D-Ribose 20 mM (C) -0.2 N.D. -0.3 +0.2 -1.2
carbon source 2'-Deoxyinosine 5 mM (C) -0.6 N.D. -0.6 +0.4 -0.7
carbon source succinate (C) +0.5 N.D. -0.1 -0.4 -1.4
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) -1.0 N.D. -0.3 +0.3 -0.3
phage Bu1_100 +0.4 N.D. -0.9 +0.1 -0.6
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) -0.3 N.D. -0.3 +0.3 -0.7
carbon source 4-Methyl-2-oxopentanoic (C) +0.3 N.D. -0.0 +0.1 -1.2
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.8 N.D. -0.0 -0.3 -0.9
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM +0.6 N.D. +0.1 +0.2 -1.3
carbon source Deoxyribonucleic from herring sperm 10 mg/mL (C) +0.4 N.D. -0.6 +0.6 -0.7
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days -0.7 N.D. -0.3 +0.1 +0.7
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x +0.8 N.D. +0.2 -0.2 -1.0
carbon source succinate (C) +0.9 N.D. -0.2 -0.0 -0.5
in planta Plant=Zea_mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 N.D. -0.4 +0.0 +0.8
carbon source 2-Deoxy-D-Ribose (C) +0.2 N.D. -0.4 -0.4 +1.5
carbon source 2-Deoxy-D-Ribose (C) -0.2 N.D. +0.2 -0.2 +1.3
carbon source D-Glucose (C) -0.0 N.D. -0.4 -0.2 +1.8
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.7 N.D. -0.2 +0.2 +0.4
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. -0.4 +0.1 +1.1
phage Bu1_10 +0.9 N.D. +0.2 +0.8 -0.0
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.6 N.D. -0.9 +0.4 +3.1
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