Fitness for 5 genes in Paraburkholderia bryophila 376MFSha3.1

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500 ntH281DRAFT_03763 and H281DRAFT_03764 overlap by 4 nucleotidesH281DRAFT_03764 and H281DRAFT_03765 overlap by 4 nucleotidesH281DRAFT_03765 and H281DRAFT_03766 overlap by 4 nucleotidesH281DRAFT_03766 and H281DRAFT_03767 are separated by 143 nucleotides H281DRAFT_03763: H281DRAFT_03763 - Catechol 2,3-dioxygenase, at 281,240 to 281,779 _03763 H281DRAFT_03764: H281DRAFT_03764 - ribulose-bisphosphate carboxylase large chain, at 281,776 to 283,074 _03764 H281DRAFT_03765: H281DRAFT_03765 - Uncharacterized conserved protein YgbK, DUF1537 family, at 283,071 to 284,462 _03765 H281DRAFT_03766: H281DRAFT_03766 - glucose 1-dehydrogenase, at 284,459 to 285,259 _03766 H281DRAFT_03767: H281DRAFT_03767 - Protein of unknown function (DUF3309), at 285,403 to 285,558 _03767
Group Condition H281DRAFT_03763 H281DRAFT_03764 H281DRAFT_03765 H281DRAFT_03766 H281DRAFT_03767
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.5x; and D-Glucose 55.5 mM -0.2 -0.6 -0.4 -0.3 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x -0.1 -0.3 -0.3 -0.6 N.D.
carbon source butyrate (C) -0.5 -0.3 -0.8 +0.2 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=root; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 -1.4 -0.0 +0.0 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum M10 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.8x; and D-Glucose 22.2 mM -0.2 -0.7 -0.3 +0.0 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.1 -0.8 -0.1 +0.2 N.D.
carbon source Valeric (C) +0.4 -0.7 -0.3 +0.2 N.D.
supernatant Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x -0.4 -0.3 -0.1 +0.4 N.D.
carbon source Glycerol (C) -0.3 +0.5 -0.2 -0.4 N.D.
supernatant RCH2_defined_noCarbon with Supernatant; Trichoderma harzianum M10 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x -0.2 -0.6 +0.4 +0.3 N.D.
carbon source Azelaic (C) -0.2 -0.8 +0.3 +0.7 N.D.
carbon source D-Glucose (C) -0.7 +0.3 +0.2 +0.3 N.D.
carbon source acetate (C) +0.2 -1.0 +0.4 +0.4 N.D.
carbon source Phenylacetic (C) +0.2 +0.6 -0.2 -0.5 N.D.
in planta Plant=Zea mays subsp. mays; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=14_days +0.3 -0.6 +0.4 +0.1 N.D.
in planta Plant=Brachypodium_distachyon ; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.1 +0.7 -0.1 -0.3 N.D.
carbon source 3-hydroxybutyric (C) +0.3 +0.3 +0.2 -0.4 N.D.
carbon source 2-Deoxy-D-Ribose (C) -0.4 +0.6 +0.1 +0.1 N.D.
carbon source Sebacic (C) +0.2 -0.5 +0.2 +0.5 N.D.
carbon source D-Glucose (C) +0.5 -0.3 +0.3 +0.2 N.D.
carbon source Protocatechuic Acid (C) -0.3 +0.7 +0.1 +0.1 N.D.
carbon source 2-Deoxyadenosine 5-monophosphate 2.5 mM (C) +0.5 -0.4 +0.3 +0.4 N.D.
phage Bu1_10 +0.4 -0.1 +0.8 +0.0 N.D.
carbon source Hexanoic (C) -0.1 +0.4 +0.1 +0.9 N.D.
in planta Plant=Zea_mays; PlantTreatment=None; Sample=soil; GrowthSubstrate=0.5X_MS_agar; Collection=outgrowth_LB; Time=7_days +0.4 +0.2 +0.2 +0.6 N.D.
carbon source 2'-Deoxyinosine 5 mM (C) +0.2 +0.0 +0.8 +0.4 N.D.
carbon source acetate (C) -0.1 +0.8 +0.0 +0.6 N.D.
carbon source 2'-Deoxyinosine 10 mM (C) +0.3 +0.3 +0.4 +0.6 N.D.
ecofab LB in EcoFAB_3.5mL +0.3 +0.1 +0.7 +0.4 N.D.
phage Bu1_100 +0.5 +0.6 +0.4 +0.1 N.D.
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